Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0602
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 31 0.73
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 31 0.73
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 30 1.7
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family... 29 3.9
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 28 6.8
At1g44770.1 68414.m05129 expressed protein 28 6.8
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi... 28 6.8
At2g40070.1 68415.m04923 expressed protein 27 9.0
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 31.1 bits (67), Expect = 0.73
Identities = 26/100 (26%), Positives = 32/100 (32%)
Frame = +1
Query: 400 PPAIXAAPDLPTTXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIA 579
PP AP PTT PA+ + T + A PP P S P A
Sbjct: 26 PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSSPPPASPPPA 85
Query: 580 VNTTSVSXALPASTVAPSEPFSRSETPTALVTAXTPKTFP 699
S P ++ P+ P TP A P P
Sbjct: 86 TPPPVASPPPPVASPPPATP-PPVATPPPAPLASPPAQVP 124
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 31.1 bits (67), Expect = 0.73
Identities = 26/100 (26%), Positives = 32/100 (32%)
Frame = +1
Query: 400 PPAIXAAPDLPTTXSPASACGLIRFRSAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIA 579
PP AP PTT PA+ + T + A PP P S P A
Sbjct: 26 PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPVSSPPPASPPPA 85
Query: 580 VNTTSVSXALPASTVAPSEPFSRSETPTALVTAXTPKTFP 699
S P ++ P+ P TP A P P
Sbjct: 86 TPPPVASPPPPVASPPPATP-PPVATPPPAPLASPPAQVP 124
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 363 CFHQGRCRTVSNSGEWRLGARAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRYRRFSVR 190
C G ++S +R G + +++ CEGS SS SS W R K++++R V
Sbjct: 31 CKFHGTSSSISLRS-YRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89
Query: 189 LHR 181
L+R
Sbjct: 90 LNR 92
>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At3g25690,
At5g61090 [Arabidopsis thaliana]
Length = 681
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/92 (25%), Positives = 31/92 (33%)
Frame = +1
Query: 301 SSPQSPLPTVRDCTASSLMKXXXXXXXXXXXXKPPAIXAAPDLPTTXSPASACGLIRFRS 480
+SPQ+P PTV S ++ K PA P + C + S
Sbjct: 303 TSPQTPSPTVSTFNTKSSLRSQPPPPPPSPEHKAPAPPPPPPMSKASESGEFCQFSKTHS 362
Query: 481 AKTNXXQTDSAARPPVRSPTLARSVVTLIPKI 576
TN S PP P RS+ K+
Sbjct: 363 --TNGDNAPSMPAPPA-PPGSGRSLKKATSKL 391
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 499 QTDSAARPPVRSPTLARSVVTLIPKIAV--NTTSVSXALPASTVAPSEPFSRSETPTALV 672
++D ++RP T+ S + I +V TT+ AS +P SRS TP++
Sbjct: 106 ESDPSSRPTRSGSTIRPSNIPTIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRK 165
Query: 673 TAXTPKT 693
T T
Sbjct: 166 TPSPTST 172
>At1g44770.1 68414.m05129 expressed protein
Length = 271
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 406 REAXPFQQFQKTSHLFSSGKMPYSLEQWGVEIGG 305
+E + K ++ +GKM Y+L WG+ GG
Sbjct: 212 QEVTALSKVGKVVDIWHAGKMFYTLSTWGLAFGG 245
>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
to DNA repair by nucleotide excision (NER) RAD23
protein, isoform II GI:1914685 from [Daucus carota]
Length = 368
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 499 QTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAP--SEPFSRSET 657
+T S+A P PT + +A +T+ S A+PAS P +P ++S+T
Sbjct: 78 KTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVPASNSTPVQEQPTAQSDT 132
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 9.0
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +1
Query: 478 SAKTNXXQTDSAARPPVRSPTLARSVVTLIPKIAVNTTSVSXALPASTVAPSEPFSRSET 657
S T+ SA RP S T +RS V+ K + S S + T S+P + +
Sbjct: 206 STPTSRATVSSATRP---SLTNSRSTVSATTKPTPMSRSTSLSSSRLTPTASKPTTSTAR 262
Query: 658 PTALVTAXTPKT 693
VT TP T
Sbjct: 263 SAGSVTRSTPST 274
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,510
Number of Sequences: 28952
Number of extensions: 291483
Number of successful extensions: 854
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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