Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0601
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8YQJ8 Cluster: Alr3825 protein; n=3; Nostocaceae|Rep: ...    36   1.1  
UniRef50_Q4P8A7 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_A6C5V1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_Q08759 Cluster: Myb protein; n=2; Xenopus|Rep: Myb prot...    34   2.6  
UniRef50_UPI0001560067 Cluster: PREDICTED: similar to growth hor...    33   5.9  
UniRef50_A7B193 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  
UniRef50_Q4WNH0 Cluster: Rho GTPase activator (Bem3), putative; ...    33   5.9  
UniRef50_A1CE30 Cluster: RhoGAP domain protein; n=3; Aspergillus...    33   7.8  

>UniRef50_Q8YQJ8 Cluster: Alr3825 protein; n=3; Nostocaceae|Rep:
           Alr3825 protein - Anabaena sp. (strain PCC 7120)
          Length = 297

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 510 TRGRVLHKYPVVNAGCSSTGLPLLTVGVGPRIHWEVI---PSECEGRRHIQYV 361
           T GRV H YP+     +  GLP +TVG+ PR  +E++   P    GR  +QY+
Sbjct: 221 TTGRVTHDYPITVEEATEMGLP-ITVGL-PRSIYELMDLYPQSQGGRPSVQYI 271


>UniRef50_Q4P8A7 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 555

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +1

Query: 283 PPRVRRLLLFRQGADQSGDVSA-SSTVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQARG 459
           P +VRRL    +G+D SG   A ++  + +  ++ LT T     V  G  S      AR 
Sbjct: 258 PSQVRRLRYECKGSDSSGTPQAGNAAANAVAQAANLTATPTSASVAAGSRSQSGAASARS 317

Query: 460 RA----PGINDRIFVQYSSPSRHRAK 525
           RA       N  +    S PSR +A+
Sbjct: 318 RASASIAATNGSVVASSSQPSRSKAQ 343


>UniRef50_A6C5V1 Cluster: Putative uncharacterized protein; n=1;
           Planctomyces maris DSM 8797|Rep: Putative
           uncharacterized protein - Planctomyces maris DSM 8797
          Length = 310

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +1

Query: 277 DSPPRVRRLLLFRQGADQSGDVS------ASSTVHVLNMSSTLTLTRDDLPVDPGPHSDG 438
           + PP    ++LF    DQ G++S      + S +  L+   + TLTRD++P  P P  D 
Sbjct: 56  EGPPPDPYMILF--DTDQDGEISPREIEQSGSVLKKLDRDQSGTLTRDEMPRPPHPPRDH 113

Query: 439 QERQARGRAPGIN 477
                  R PG N
Sbjct: 114 HPGAEHHRRPGAN 126


>UniRef50_Q08759 Cluster: Myb protein; n=2; Xenopus|Rep: Myb protein
           - Xenopus laevis (African clawed frog)
          Length = 624

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 540 MQSIDLRPMTTRGRVLHKYPVVNAGCSSTGLPLLTVGVGPRIHWEVIPSECEGRRH 373
           ++ ++L  M+T   +  K  ++N   S T     T+G  PR+H +  P  C G  H
Sbjct: 284 IKELELLLMSTENEINQKQELLNHTASYTTCHSTTIGGNPRLHGQSTPDSCLGDPH 339


>UniRef50_UPI0001560067 Cluster: PREDICTED: similar to growth
           hormone releasing factor; n=1; Equus caballus|Rep:
           PREDICTED: similar to growth hormone releasing factor -
           Equus caballus
          Length = 222

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = +1

Query: 283 PPRVRRLLLFRQGADQSGDVSASSTVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQARGR 462
           PPR RRL    +G+  +   S ++    L   +   L R   PV+P P SD  E  AR  
Sbjct: 71  PPRSRRL----RGSAPALSPSPAARAAALTSRAAAPLPRKWFPVNPDPGSDVPEPPARWP 126

Query: 463 APGINDRIFVQYS 501
            P +   +FV  S
Sbjct: 127 PPALPGWLFVALS 139


>UniRef50_A7B193 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus gnavus ATCC 29149|Rep: Putative
           uncharacterized protein - Ruminococcus gnavus ATCC 29149
          Length = 293

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +1

Query: 127 SSHFMECISRVCTRPTKLFGLEMKIVSCNKIVSISKNFIGKSIKRSQTVLDSPPRVRRL 303
           SSH +  I R CTR   +   E +I++C+++ ++SK    +   + Q  LDS   +R L
Sbjct: 185 SSHVLSEIQRNCTRAAII--REGRIIACDRVEALSKTNAKRISVQGQVSLDSLEEIRDL 241


>UniRef50_Q4WNH0 Cluster: Rho GTPase activator (Bem3), putative;
           n=2; Trichocomaceae|Rep: Rho GTPase activator (Bem3),
           putative - Aspergillus fumigatus (Sartorya fumigata)
          Length = 1508

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +1

Query: 355 TVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQARGRAPGINDRIFVQYSSPSRHRAKIDA 534
           T+ V + S  L L R +  V   P  D Q RQ+      + DR      SP++  A+  A
Sbjct: 733 TLGVFSRSENLELWRVEKVVAALPQLDQQIRQSSALWMKLPDRSIFSGHSPAKIDARRAA 792

Query: 535 LHEYVDRLFSTP 570
           L+ Y + L  TP
Sbjct: 793 LNSYFEALLDTP 804


>UniRef50_A1CE30 Cluster: RhoGAP domain protein; n=3;
           Aspergillus|Rep: RhoGAP domain protein - Aspergillus
           clavatus
          Length = 1289

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 355 TVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQARGRAPGINDRIFVQYSSPSRHRAKIDA 534
           T+ + + S  L L R +  +   P  D Q RQ+      + DR      SP++  A+  A
Sbjct: 568 TLSIFSRSKNLELWRVEKVIAALPQLDQQVRQSSALWMKLPDRSIFSGHSPAKIDARRAA 627

Query: 535 LHEYVDRLFSTP 570
           L+ Y + L  TP
Sbjct: 628 LNTYFETLLDTP 639


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,739,914
Number of Sequences: 1657284
Number of extensions: 14472168
Number of successful extensions: 37512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37503
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)