Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0601
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.1  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    23   5.5  
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   7.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   9.5  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 523 KIDALHEYVDRLFSTPDCGTAPVNMSTIVGTAHAFCG 633
           KID L  +   +   P C   P+    ++   HA CG
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCG 899


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 23.4 bits (48), Expect(2) = 5.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 519 PMTTRGRVLHKYPVVNAGCSSTGLPLLTVGVGPRIH 412
           P+T   R+L K P      +   +  LT+  GP  H
Sbjct: 22  PVTNHERILPKQPSFPTAPAQNEIATLTIRNGPIFH 57



 Score = 20.6 bits (41), Expect(2) = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 300 TTDPGGRVQNSLGPFYALPYKIFT 229
           TT P G V++   P Y     IFT
Sbjct: 74  TTSPVGYVESLTDPSYKQQILIFT 97


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 296 RTLGGESRTVWDRFMLFPIK 237
           RTLG  S+ +WDR +  PI+
Sbjct: 437 RTLGVASQLIWDRALGLPIE 456


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 229 SKNFIGKSIKRSQTVLDSPPRVRRLLLFRQGADQSGDVSASSTVHVLNMSSTL 387
           S+N +  +IK+    + +  R+R++ LFR  AD     S  ++  V  + STL
Sbjct: 72  SRNDLLVTIKKMDNSVQNVSRIRQVFLFRDMAD--FQYSTQNSPFVQKLDSTL 122


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 339 VTTLVRALTEQQQTTDPGGRVQNSLG 262
           V + +  L EQ Q+ DP  R+Q  LG
Sbjct: 2   VESKIIKLLEQVQSADPNSRIQAELG 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,030
Number of Sequences: 5004
Number of extensions: 55626
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)