Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0601
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0008 + 51332-51394,51721-51777,51925-52266 31 1.1
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 31 1.1
07_03_0454 + 18364654-18366594 31 1.1
06_01_0599 - 4327671-4330034 29 2.4
08_02_0043 - 11550185-11550418,11551525-11551568,11552134-115521... 29 4.2
12_01_0007 + 49744-49806,50133-50189,50337-50678 28 5.6
07_03_0899 + 22421038-22422642 28 5.6
01_06_0460 + 29545030-29546377,29546463-29547085 28 5.6
08_02_0648 - 19694538-19696569,19697151-19697998 28 7.4
06_01_0083 - 659510-661267,661577-662384,662700-663646 28 7.4
12_01_0391 - 3086802-3087292,3089198-3089322,3089421-3089633,308... 27 9.8
>11_01_0008 + 51332-51394,51721-51777,51925-52266
Length = 153
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 252 HKTVPDCSGLAPQGPSSAVVPSGRGPEW*RQCQLNCARTE 371
H+ P L+ G ++A++P+ PEW + Q + AR E
Sbjct: 72 HELPPSLVNLSDGGAAAAIIPTRSVPEWWPEMQASLARDE 111
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 312 EQQQTTDPGGRVQNSLGPFYA 250
+QQQ D GGR+QNS G F A
Sbjct: 34 QQQQQLDHGGRMQNSFGQFQA 54
>07_03_0454 + 18364654-18366594
Length = 646
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -3
Query: 621 MGCADNSRHIHRCGSTVRRAEQTVNIFMQSIDLRPMTTRGRVLHKYPVVNAGCSSTGLP 445
+G A+ H+H G V TVNI + + + + +R YPV AG ++GLP
Sbjct: 457 VGAAEGLAHLHSLG-IVHGNVSTVNILLDDLSVLKVISRN-----YPVKIAGYGTSGLP 509
>06_01_0599 - 4327671-4330034
Length = 787
Score = 29.5 bits (63), Expect = 2.4
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 340 VSASSTVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQARGRAP-GINDRIFVQYSSPSR- 513
V+ SST+ L+ ++L P+DP P + R A RAP G R+F + P R
Sbjct: 25 VALSSTLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHLLRLFRGFPRPDRF 84
Query: 514 -HRAKIDALHEYVDR-LFSTPD 573
A + +L R LF PD
Sbjct: 85 LRNALLRSLPSLRPRLLFPCPD 106
>08_02_0043 -
11550185-11550418,11551525-11551568,11552134-11552185,
11552911-11553111,11553462-11553539,11553887-11554155,
11554241-11554300,11554433-11554547,11554651-11554710,
11554824-11555002,11555250-11555319,11555838-11555987,
11556108-11556287,11556366-11556449
Length = 591
Score = 28.7 bits (61), Expect = 4.2
Identities = 25/89 (28%), Positives = 37/89 (41%)
Frame = +1
Query: 271 VLDSPPRVRRLLLFRQGADQSGDVSASSTVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQ 450
V +P R+R L A +SGD S S + S L D + +D ++
Sbjct: 12 VAPTPARLREALAALSKAFESGDCSDGSAAAAV--SDLLNAAADAADAE----ADAEDEA 65
Query: 451 ARGRAPGINDRIFVQYSSPSRHRAKIDAL 537
A G + + SSPS ++ IDAL
Sbjct: 66 AAGVVEEMLREVHAFLSSPSSNQLAIDAL 94
>12_01_0007 + 49744-49806,50133-50189,50337-50678
Length = 153
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 252 HKTVPDCSGLAPQGPSSAVVPSGRGPEW*RQCQLNCARTE 371
H+ P L+ ++A++P+ PEW + Q + AR E
Sbjct: 72 HELPPSLVNLSDGAAAAAIIPTRSVPEWWPEMQASLARDE 111
>07_03_0899 + 22421038-22422642
Length = 534
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 473 LTTGYLCNTLPRVVIGRRSMLCMNMLTVCSA 565
L G+L TL ++GRR ML ++++T+ A
Sbjct: 139 LAGGFLLTTLADTLLGRRKMLVLSLVTMSVA 169
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 280 SPPRVRRLLLFRQGADQSGDVSASSTVHVLNMSSTLTL 393
SPPRVRR++L +G GD A + + L M S L+L
Sbjct: 75 SPPRVRRVVL--EGLRLGGDAGAVAALAGLPMLSFLSL 110
>08_02_0648 - 19694538-19696569,19697151-19697998
Length = 959
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +1
Query: 220 VSISKNFIGKSIKRSQTVLDSPPRVRRLLLFRQGADQSGDVSASSTVHVLNMSS 381
+S +NF+ +I SQT+ S ++RRL L + S ++ S HV ++S+
Sbjct: 517 LSTEENFV--TIVNSQTITSSTDKIRRLSLQGNCEENSVWLNTSDFSHVRSLSA 568
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 SGDVSASSTVHVLNMSSTLTLTRDDLPVDP 420
SGD+S S LN T+ T D+ P+DP
Sbjct: 67 SGDMSPESGQEFLNYHVTIPATPDNQPMDP 96
>12_01_0391 -
3086802-3087292,3089198-3089322,3089421-3089633,
3089726-3090711
Length = 604
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 334 GDVSASSTVHVLNMSSTLTLTRDDLPVDPGPH 429
G+V+ H +N+ ST +L RD +P G H
Sbjct: 204 GEVTMGDRKHHVNLGSTKSLKRDYIPSTCGDH 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,022,868
Number of Sequences: 37544
Number of extensions: 417439
Number of successful extensions: 1095
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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