Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0601
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   1.1  
SB_9235| Best HMM Match : TolA (HMM E-Value=0.33)                      30   1.9  
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)                       29   2.5  
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_11532| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)                 28   5.7  
SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   5.7  

>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = -3

Query: 579  STVRRAEQTVNIFMQSIDLRPMTTRGRVLHKYPVVNAGCSSTGLPL 442
            STVR     + I  + + +RPMT RGR+  +  +   GC+S G PL
Sbjct: 1066 STVRSHALAMPILARYVRVRPMTWRGRIAMRVEIF--GCTS-GFPL 1108


>SB_9235| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 579

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +2

Query: 371 ICRLPSHSLGMTSQWIXXXXXXXXXXXXXDEHPALTTGYLCNTLPRVVIGRRSMLCMNML 550
           + ++P   +  +  W              DEH A+   Y  +   RV++  RS +C ++L
Sbjct: 193 LAQVPQSDIIASEHWSAIRKGLLAALADPDEHLAIFFRYFTSKTFRVILLNRSKMCGSLL 252

Query: 551 TVC-SARRTVEP 583
           + C S    V P
Sbjct: 253 SKCVSTENQVAP 264


>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
          Length = 1604

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 611 PTIVDIFTGAVPQSGVLNKRSTYSCRA 531
           PTI  + TGA     VLN+R+T +C A
Sbjct: 525 PTITTLSTGAFDNGVVLNQRATLTCSA 551


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 464 HPALTTGYLCNTLPRVVIGRRSMLCMNMLTVCSAR 568
           H A+TT Y+ N +P +   R    C + L  CS R
Sbjct: 374 HVAMTTPYVINLIPTIECPRLWPKCASWLKTCSRR 408


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 271 VLDSPPRVRRLLLFRQGADQSGDVSASSTVHVLNMSSTLTLTRDDLPVDPG 423
           V  + P    LL FR+ A Q+  ++  +T + +N SST       + V  G
Sbjct: 123 VSSTAPLSTSLLAFRETAAQTSHIAIINTTYYINASSTSASPHSSISVHDG 173


>SB_11532| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
          Length = 326

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 193 MKIVSCNKIVSISKNFIGKSIKRSQTVLDSPPR 291
           ++++   K+   SKN +G +++ +QTV++  PR
Sbjct: 289 IRVLGLKKLNCWSKNRVGNNMRNAQTVIERDPR 321


>SB_70| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 181 FGLEMKIVSCNKIVSISKNFIGKSIKRSQTVL 276
           FG+E  ++ C  IV+IS     K ++R  T+L
Sbjct: 30  FGVEAFLIVCGNIVTISTFISTKRLRRQSTIL 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,891,805
Number of Sequences: 59808
Number of extensions: 478408
Number of successful extensions: 1313
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)