Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0601
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical pr...    26   1.3  
AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin...    29   2.2  
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   3.8  
Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical pr...    25   6.0  
Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z81567-3|CAB04587.1|  301|Caenorhabditis elegans Hypothetical
           protein K08C9.4 protein.
          Length = 301

 Score = 26.2 bits (55), Expect(2) = 1.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 472 CRVLVHGPASPDRRSGAPDPLG 407
           C     GPA PD  +GAP P G
Sbjct: 137 CPAGAPGPAGPDGEAGAPGPDG 158



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = -2

Query: 325 PRPDGTTADDGPWG--ASPEQSG 263
           P PDG    DGP G   +P ++G
Sbjct: 154 PGPDGQPGQDGPAGIDGAPGEAG 176


>AC024785-1|AAF60598.2|  466|Caenorhabditis elegans C-type lectin
           protein 70 protein.
          Length = 466

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 543 FMQSIDLRPMTTRGRVLHKYPVVNAGCSSTGLPLLTV 433
           FMQSID+ P+  R  +    PVV  G     LPLL V
Sbjct: 332 FMQSIDMMPLIERYPIYAANPVV-TGAGFKDLPLLEV 367


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 525  LRPMT-TRGRVLHKYPVVNAGCSSTGLPLLTVGVGPRIHWEVIPSECEGRR 376
            L P+T +R   L  +P +    +    PL+ + VG +I   V+P +  GRR
Sbjct: 1278 LIPVTVSRVASLDVHPTIELKSAFENSPLIHLPVGAQIQLNVVPRDARGRR 1328


>Z70682-4|CAA94581.1|  299|Caenorhabditis elegans Hypothetical
           protein F08G5.4 protein.
          Length = 299

 Score = 24.6 bits (51), Expect(2) = 6.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 454 GPASPDRRSGAPDPLG 407
           GPA PD   GAP P G
Sbjct: 145 GPAGPDGAPGAPGPDG 160



 Score = 21.8 bits (44), Expect(2) = 6.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 325 PRPDGTTADDGPWG 284
           P PDG    DGP G
Sbjct: 156 PGPDGQPGQDGPAG 169


>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical
           protein K09A9.4 protein.
          Length = 716

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 555 FVQHAGLWNRTGEYVDYCRHSPCVLW 632
           FV H G     G YV YCRH     W
Sbjct: 494 FVVHEGRSLEFGHYVSYCRHEQDNQW 519


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,753
Number of Sequences: 27780
Number of extensions: 349423
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)