Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0601
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56140.1 68418.m07003 KH domain-containing protein                  28   4.7  
At4g29270.1 68417.m04185 acid phosphatase class B family protein...    28   6.2  
At1g24300.1 68414.m03066 GYF domain-containing protein contains ...    28   6.2  
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    27   8.2  
At4g02130.2 68417.m00285 glycosyl transferase family 8 protein l...    27   8.2  
At4g02130.1 68417.m00284 glycosyl transferase family 8 protein l...    27   8.2  
At3g55560.1 68416.m06169 DNA-binding protein-related contains Pf...    27   8.2  

>At5g56140.1 68418.m07003 KH domain-containing protein 
          Length = 315

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 267 DCSGLAPQGPSSAVVPSGRGPEW 335
           D +G A Q PS   VPS  GP W
Sbjct: 130 DMNGWASQFPSERSVPSSPGPNW 152


>At4g29270.1 68417.m04185 acid phosphatase class B family protein
           similar to acid phosphatase [Glycine max] GI:3341443;
           contains Pfam profile PF03767: HAD superfamily
           (subfamily IIIB) phosphatase
          Length = 256

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 465 CSSTGLPLLTVGVGPRIHWEVIPSECE 385
           C S  L   T  VGP   W+VIPS+CE
Sbjct: 44  CESWRLAAETNNVGP---WKVIPSQCE 67


>At1g24300.1 68414.m03066 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1417

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 352  STVHVLNMSSTLTLTRDDLPVDPGPHSDGQERQARGRAPGINDRIFVQYSSPSRHRAKID 531
            +T H+   +STL     +  +  G     Q     GR  G + ++   ++    HR+ ID
Sbjct: 1007 ATTHMQIGNSTLGFNHQNPRIPIGEPHFSQLESMEGRWSGADTQVVGDWAESQLHRSNID 1066

Query: 532  ALH 540
            A H
Sbjct: 1067 AEH 1069


>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
            trafficking regulator - Bos taurus, EMBL: AF114785
          Length = 3471

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
 Frame = +1

Query: 250  SIKRSQTVLDSPPRVRRLLLFRQGADQSGDVSASSTVHVL-NMSSTLTLTRDDLPVDPGP 426
            S  +S T+    P    +  F   +DQS     SS VH L  +S  + L  D+     GP
Sbjct: 2048 SPSKSSTISTPHPSHISVSEFDASSDQSSGSQGSSAVHTLFTISPKVLLETDESGYGGGP 2107

Query: 427  HSDGQERQARGRAPGINDRIFVQYSSPSRHRAKIDALHEYVD 552
             S G        A    D +  Q  +     + ++ L  YVD
Sbjct: 2108 CSAGASAVLDFMAEVCADIMTEQIKAVQALESILEMLPLYVD 2149


>At4g02130.2 68417.m00285 glycosyl transferase family 8 protein low
           similarity to lgtC of Neisseria sp., GenBank accession
           number U14554, U65788; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 346

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +3

Query: 270 CSGLAPQGPSSAVVPSGRGPEW*R-----QCQLNCARTEYVVYPHTH 395
           C  L P GP S +  SG G  W R      C L+   T Y +Y H+H
Sbjct: 301 CRDLHP-GPVSLLHWSGSGKPWIRLDSKRPCPLDALWTPYDLYRHSH 346


>At4g02130.1 68417.m00284 glycosyl transferase family 8 protein low
           similarity to lgtC of Neisseria sp., GenBank accession
           number U14554, U65788; contains Pfam glycosyl
           transferase family 8 domain PF01501
          Length = 346

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +3

Query: 270 CSGLAPQGPSSAVVPSGRGPEW*R-----QCQLNCARTEYVVYPHTH 395
           C  L P GP S +  SG G  W R      C L+   T Y +Y H+H
Sbjct: 301 CRDLHP-GPVSLLHWSGSGKPWIRLDSKRPCPLDALWTPYDLYRHSH 346


>At3g55560.1 68416.m06169 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 310

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 394 TRDDLP-VDPGPHSDGQERQARGRAPGINDR 483
           +RD+ P V+PG  S    R+ RGR PG  ++
Sbjct: 70  SRDEQPAVEPGSGSGSTGRRPRGRPPGSKNK 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,761,815
Number of Sequences: 28952
Number of extensions: 309136
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)