Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0600
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.49 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.6  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    22   6.0  
AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    21   8.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 256 TGPRRDQCASCPPDWRLAAGECRPECPQN 342
           +G R  + A+C PD       C  ECP+N
Sbjct: 709 SGNRLARPANCSPDLYAVMLNCWKECPKN 737


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 1/102 (0%)
 Frame = +1

Query: 373 CHHYCQDCHGAXPQKCTSCPPHFSLXDGLCVECLXSQYYEVRTRKCRPCHDSCRSCSXSG 552
           CH    DC     +   +C    +    +C E        + T  C P       C  +G
Sbjct: 65  CHENINDCKVNPCENGGTCVDKINAFQCICKEGWEGALCNINTDDCSP-----NPCRNNG 119

Query: 553 PTSCVTCAHPLQLDRVN-YKCLPCCLKNMASIYLTVNETSXC 675
             SCV      + +  N +K   C LK+    + T      C
Sbjct: 120 --SCVDRIADFECNCKNGWKGKTCSLKDSHCDHTTCKNGGTC 159



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = +1

Query: 250 TCTGPRRDQCASCPPDW 300
           TC    +     CPPDW
Sbjct: 158 TCQDLGKTFMCRCPPDW 174


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 24  SVTRVEVCGRMW 59
           ++TR+  CG MW
Sbjct: 531 AITRIYACGTMW 542


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 24  SVTRVEVCGRMW 59
           ++TR+  CG MW
Sbjct: 531 AITRIYACGTMW 542


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 409 PQKCTSCPPHFS 444
           P KCT CP  FS
Sbjct: 7   PCKCTICPKAFS 18


>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 56  VDAGIIKPPVNAHIAPTHVRHAFHG*TVHH 145
           V+ G++KP +    AP ++        +HH
Sbjct: 18  VETGVLKPGMVVVFAPANITTEVKSVEMHH 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,966
Number of Sequences: 336
Number of extensions: 5052
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)