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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0600
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    28   1.2  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    27   2.2  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   2.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   2.2  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    27   2.9  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    27   2.9  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   6.6  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    26   6.6  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   8.7  

>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 244 TIDST*NKSRHLGNSLGHKLLDKY---QIVSAKPPCMMYSS 131
           T D+     R+ GNSLG+ + DKY   ++   KPP   + S
Sbjct: 139 TTDALKRALRNFGNSLGNCMYDKYYLREVGKMKPPTYHFDS 179


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 529 CRSCSXSGPTSCVTCAHPLQLDRVNYKCLPCCLKNMAS 642
           CR+C+ S          PLQLD  N+    CCL+   S
Sbjct: 510 CRTCALSRMRGRPVGFCPLQLDFNNWPKFLCCLQGFVS 547


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 443 EKCGGQEVHFCGXAPWQS*Q*W*HRRQLVSHGKKFCGHS 327
           EKCGG E H  G  P    + W   R +  +    CGH+
Sbjct: 106 EKCGG-ETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHN 143


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 190 KLLDKYQIVSAKPPCMMYSSAVK 122
           KL+ KY +V +  PCM Y   VK
Sbjct: 321 KLVGKYDLVESPDPCMQYIRYVK 343


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 28  LQGSRCVAECGRGYYQTAGKCSHCPH 105
           L+    V+ CG  Y   A +CS CP+
Sbjct: 235 LKSKNAVSSCGNCYLGDAFRCSGCPY 260


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 357 FPWKEVLWALRPALSCCQAPIRRTRCALVSPGSSTCFTR 241
           FP+    W + PA++C    I +T  A ++P S+ C T+
Sbjct: 172 FPFLMCAWKIAPAVACGNTIILKT--AELTPLSALCLTK 208


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 88  CSHCPHTCSSCVSRL 132
           CS C HTC++C  R+
Sbjct: 71  CSSCAHTCTACRMRI 85


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = +1

Query: 277  CASCPPDWRLAAGECRPECPQNFFP---WETSCRRC 375
            CAS  PD  + A E  P C     P   WE  C  C
Sbjct: 932  CASWTPDVYVPAEESEPVCGIAQLPPNRWEKKCEVC 967


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 412  QKCTSCPPHFSLXDGLCVEC 471
            QKC  C  H +  DGLC  C
Sbjct: 945  QKCLRCWMHTAHEDGLCDRC 964


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 166 VSAKPPCMMYSSAVKRMTNMCGGNVSIYRRFDNTRVHIL-PHTSTLVTE 23
           +++ P   + S+AVK + +    N+S+     NT + +L  H S +VTE
Sbjct: 375 INSHPNPSVASTAVKALGDFASANISMAPSCLNTLLLLLKSHNSLIVTE 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,587
Number of Sequences: 5004
Number of extensions: 71574
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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