Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0600
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 28 1.2
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 2.2
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 27 2.2
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 2.2
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 2.9
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 27 2.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 3.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 6.6
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.7
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 244 TIDST*NKSRHLGNSLGHKLLDKY---QIVSAKPPCMMYSS 131
T D+ R+ GNSLG+ + DKY ++ KPP + S
Sbjct: 139 TTDALKRALRNFGNSLGNCMYDKYYLREVGKMKPPTYHFDS 179
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 529 CRSCSXSGPTSCVTCAHPLQLDRVNYKCLPCCLKNMAS 642
CR+C+ S PLQLD N+ CCL+ S
Sbjct: 510 CRTCALSRMRGRPVGFCPLQLDFNNWPKFLCCLQGFVS 547
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 443 EKCGGQEVHFCGXAPWQS*Q*W*HRRQLVSHGKKFCGHS 327
EKCGG E H G P + W R + + CGH+
Sbjct: 106 EKCGG-ETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHN 143
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 190 KLLDKYQIVSAKPPCMMYSSAVK 122
KL+ KY +V + PCM Y VK
Sbjct: 321 KLVGKYDLVESPDPCMQYIRYVK 343
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 28 LQGSRCVAECGRGYYQTAGKCSHCPH 105
L+ V+ CG Y A +CS CP+
Sbjct: 235 LKSKNAVSSCGNCYLGDAFRCSGCPY 260
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 357 FPWKEVLWALRPALSCCQAPIRRTRCALVSPGSSTCFTR 241
FP+ W + PA++C I +T A ++P S+ C T+
Sbjct: 172 FPFLMCAWKIAPAVACGNTIILKT--AELTPLSALCLTK 208
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 88 CSHCPHTCSSCVSRL 132
CS C HTC++C R+
Sbjct: 71 CSSCAHTCTACRMRI 85
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Frame = +1
Query: 277 CASCPPDWRLAAGECRPECPQNFFP---WETSCRRC 375
CAS PD + A E P C P WE C C
Sbjct: 932 CASWTPDVYVPAEESEPVCGIAQLPPNRWEKKCEVC 967
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 412 QKCTSCPPHFSLXDGLCVEC 471
QKC C H + DGLC C
Sbjct: 945 QKCLRCWMHTAHEDGLCDRC 964
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 166 VSAKPPCMMYSSAVKRMTNMCGGNVSIYRRFDNTRVHIL-PHTSTLVTE 23
+++ P + S+AVK + + N+S+ NT + +L H S +VTE
Sbjct: 375 INSHPNPSVASTAVKALGDFASANISMAPSCLNTLLLLLKSHNSLIVTE 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,587
Number of Sequences: 5004
Number of extensions: 71574
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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