BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0600 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 28 1.2 SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 27 2.2 SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 27 2.2 SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 2.2 SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 27 2.9 SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 27 2.9 SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 27 3.8 SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.6 SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 6.6 SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.7 >SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 28.3 bits (60), Expect = 1.2 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%) Frame = -3 Query: 244 TIDST*NKSRHLGNSLGHKLLDKY---QIVSAKPPCMMYSS 131 T D+ R+ GNSLG+ + DKY ++ KPP + S Sbjct: 139 TTDALKRALRNFGNSLGNCMYDKYYLREVGKMKPPTYHFDS 179 >SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizosaccharomyces pombe|chr 3|||Manual Length = 640 Score = 27.5 bits (58), Expect = 2.2 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +1 Query: 529 CRSCSXSGPTSCVTCAHPLQLDRVNYKCLPCCLKNMAS 642 CR+C+ S PLQLD N+ CCL+ S Sbjct: 510 CRTCALSRMRGRPVGFCPLQLDFNNWPKFLCCLQGFVS 547 >SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr 2|||Manual Length = 333 Score = 27.5 bits (58), Expect = 2.2 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -2 Query: 443 EKCGGQEVHFCGXAPWQS*Q*W*HRRQLVSHGKKFCGHS 327 EKCGG E H G P + W R + + CGH+ Sbjct: 106 EKCGG-ETHMTGNGPPNEEEKWNGVRNVELYQCNVCGHN 143 >SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 27.5 bits (58), Expect = 2.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -3 Query: 190 KLLDKYQIVSAKPPCMMYSSAVK 122 KL+ KY +V + PCM Y VK Sbjct: 321 KLVGKYDLVESPDPCMQYIRYVK 343 >SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 288 Score = 27.1 bits (57), Expect = 2.9 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 28 LQGSRCVAECGRGYYQTAGKCSHCPH 105 L+ V+ CG Y A +CS CP+ Sbjct: 235 LKSKNAVSSCGNCYLGDAFRCSGCPY 260 >SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr 1|||Manual Length = 503 Score = 27.1 bits (57), Expect = 2.9 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -1 Query: 357 FPWKEVLWALRPALSCCQAPIRRTRCALVSPGSSTCFTR 241 FP+ W + PA++C I +T A ++P S+ C T+ Sbjct: 172 FPFLMCAWKIAPAVACGNTIILKT--AELTPLSALCLTK 208 >SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 26.6 bits (56), Expect = 3.8 Identities = 8/15 (53%), Positives = 11/15 (73%) Frame = +1 Query: 88 CSHCPHTCSSCVSRL 132 CS C HTC++C R+ Sbjct: 71 CSSCAHTCTACRMRI 85 >SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1131 Score = 25.8 bits (54), Expect = 6.6 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 3/36 (8%) Frame = +1 Query: 277 CASCPPDWRLAAGECRPECPQNFFP---WETSCRRC 375 CAS PD + A E P C P WE C C Sbjct: 932 CASWTPDVYVPAEESEPVCGIAQLPPNRWEKKCEVC 967 >SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 25.8 bits (54), Expect = 6.6 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +1 Query: 412 QKCTSCPPHFSLXDGLCVEC 471 QKC C H + DGLC C Sbjct: 945 QKCLRCWMHTAHEDGLCDRC 964 >SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 745 Score = 25.4 bits (53), Expect = 8.7 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 166 VSAKPPCMMYSSAVKRMTNMCGGNVSIYRRFDNTRVHIL-PHTSTLVTE 23 +++ P + S+AVK + + N+S+ NT + +L H S +VTE Sbjct: 375 INSHPNPSVASTAVKALGDFASANISMAPSCLNTLLLLLKSHNSLIVTE 423 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,292,587 Number of Sequences: 5004 Number of extensions: 71574 Number of successful extensions: 198 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 188 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 197 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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