Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0600
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0273 - 22618177-22618370,22618441-22618531 35 0.079
02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243 31 1.3
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 30 1.7
06_01_1013 - 7931756-7935109 30 1.7
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 30 1.7
04_04_0611 - 26594737-26594991,26595307-26595396,26595490-265955... 30 1.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 30 1.7
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 29 3.0
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 29 3.0
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517... 29 3.9
12_01_1093 - 11374087-11374140,11374337-11374438,11375793-113758... 29 5.2
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 29 5.2
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 29 5.2
06_01_1014 - 7936514-7936530,7936768-7936859,7937290-7937581,793... 29 5.2
06_01_0424 + 3041296-3041860,3042701-3042786,3042858-3043147,304... 28 6.9
03_01_0239 + 1859446-1860112,1861218-1861338,1861431-1861618,186... 28 6.9
01_05_0057 + 17705023-17705143,17706186-17706538,17708002-177080... 28 6.9
01_01_0138 + 1253256-1253534,1253625-1254359 28 6.9
05_05_0240 + 23548408-23549408,23549882-23549980,23550282-235503... 28 9.1
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 9.1
>03_05_0273 - 22618177-22618370,22618441-22618531
Length = 94
Score = 34.7 bits (76), Expect = 0.079
Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Frame = +1
Query: 145 CTGALRLQSGTCRAICAPGYYPDDGICSKCYLSCETC------TGPRRDQCASCPPDWRL 306
C A C C G G C L CE C +G RD+C C D
Sbjct: 26 CDAASGFCGSKCAVRCGRGRGRGSGCLRSCGLCCEECNCVPTGSGSTRDEC-PCYRDMLT 84
Query: 307 AAGECRPECP 336
A RP+CP
Sbjct: 85 AGPRKRPKCP 94
Score = 33.5 bits (73), Expect = 0.18
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 4 EACSSPLLLQGSRCVAECGRGYYQTAGKCSHCPHTCSSCVSRLNC 138
+ C + GS+C CGRG G+ S C +C C NC
Sbjct: 24 QPCDAASGFCGSKCAVRCGRG----RGRGSGCLRSCGLCCEECNC 64
>02_01_0340 + 2415272-2415486,2415883-2416308,2416313-2417243
Length = 523
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = +1
Query: 43 CVAECGRGYYQTAGKCSHCPHTCSSCVSRLNCTSCTGALRLQSGTC 180
C A G G SH P T SS R N C+G LR + G C
Sbjct: 35 CAAGGGCGCATVEADRSHAPSTPSSAAERPNQRPCSGTLR-EIGPC 79
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +1
Query: 400 GAXPQKCTSCPPHFSLXDGLCVECLXSQYYEVRTRKCRPCHDSCRSCS 543
G ++C CP FS L C S ++ + R D C CS
Sbjct: 243 GDLVEQCVQCPARFSTVGALIEHCEKSHQSNSQSSRSRVTVDVCPKCS 290
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 30.3 bits (65), Expect = 1.7
Identities = 35/130 (26%), Positives = 44/130 (33%), Gaps = 11/130 (8%)
Frame = +1
Query: 40 RCVAECGRGYYQTAGKCSHCPHTCSSCVSRLN--------C-TSCTGALRLQSGTCRAIC 192
RC CGR +CS C S ++RL C C LR C+ +C
Sbjct: 490 RCNKPCGRKKNCGRHRCSECCCPLSKPLARLEGGNWDPHLCQIPCGKKLRCGQHGCQLLC 549
Query: 193 APGYYPDDGICSKCYLSCETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRR 372
G+ P C + + TC R S PP L G P CP +
Sbjct: 550 HSGHCPP---CLETIFNDLTCACGR----TSIPPP--LPCGTPTPSCPHQCLVPQPCGHP 600
Query: 373 CHHYCQ--DC 396
H C DC
Sbjct: 601 ATHQCHFGDC 610
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 316 ECRPECPQNFFPWETSCRRCHHYCQDCHGAXPQKCTSC 429
EC P C + FP C+ H C C +C +C
Sbjct: 99 EC-PVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTC 135
>04_04_0611 -
26594737-26594991,26595307-26595396,26595490-26595515,
26595603-26595702,26595820-26595954
Length = 201
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = +1
Query: 58 GRGYYQTAGKCSHCPHTCSSCV-----SRLNCTSCTGALRLQSGTCRAICAPGYYPDDGI 222
G Y++T KCSHC S C L C + L ++G+ APG D
Sbjct: 27 GVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKTHFEQLFKETGSFSKKFAPGCRSTDKE 86
Query: 223 CSKCYLSCETCTGPRRDQCASC 288
++ + +D+CA+C
Sbjct: 87 LARAPSKICSAFSGTQDKCAAC 108
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Frame = +1
Query: 49 AECGRGYYQTAGKCSHCPHTCS-SCVSRLNCTSCTGALRLQSGTC-------RAICAPGY 204
A C G ++ +CSH ++CS C RL C + G C + C G
Sbjct: 232 AMCFCGSHRETRRCSHQRYSCSGKCNKRLGCGIHRCPVDCHDGPCPPCAVRGKHKCECGE 291
Query: 205 YPDDGICSKCYLSCE-TCTGPRRDQCASCPPDWRLAAGECRPECP 336
++ +CS+ C+ C G QC + AG+C CP
Sbjct: 292 TMEERLCSERVFQCKRECGGML--QCGKHSCERGCHAGKC-GGCP 333
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 58 GRGYYQTAGKCSHCPHTCSSC 120
G Y++T KCSHC T S C
Sbjct: 27 GVSYHKTCFKCSHCKGTLSMC 47
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 235 YLSCETCTGPRRDQCASCPPDWRLAAGECR 324
Y C TC GP + +C+ C R +G+C+
Sbjct: 29 YHECATCHGPAKTRCSRC-KSVRYCSGKCQ 57
>11_01_0643 -
5174154-5174254,5174296-5174346,5174611-5174739,
5174869-5175118,5175220-5177157
Length = 822
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 67 YYQTAGKCSHCPHTCSSCVSRLNCTSCTGALRLQSGTCRAICAPGYYPDDG 219
+ ++ K CP S+C R CT C A ++ C + G YPDDG
Sbjct: 711 FNESNSKTICCPVQVSTCFGR--CTFCDEASKILHPPCLS----GSYPDDG 755
>12_01_1093 -
11374087-11374140,11374337-11374438,11375793-11375873,
11376005-11376343
Length = 191
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +1
Query: 289 PPDWRLAAGECRPECPQNFFPWETSCRRCHHYCQDCHGAXPQKCTSC 429
PP+ RLA G + F S R C C C G C +C
Sbjct: 17 PPELRLAYGARALTLGRAVFSLLPSPRHCESPCPACRGRVASGCLAC 63
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 52 ECGRGYYQTAGKCSHCPH 105
ECG GYY A C HC H
Sbjct: 341 ECG-GYYDAATVCDHCHH 357
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +1
Query: 460 CVECLXSQYYEVRTRKCRPCHDSCRSCSXSGPTSCVTCAHPLQLDRVNYKCL 615
C CL + Y + +C H C C C TC H L N +CL
Sbjct: 445 CPVCLNAMYPPIH--QCSNGHTLCSGCKPRVHNRCPTCRHELG----NIRCL 490
>06_01_1014 -
7936514-7936530,7936768-7936859,7937290-7937581,
7937690-7937759,7938131-7938223
Length = 187
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +1
Query: 508 CRPCHDSCRSC---SXSGPTSCVTCAHPLQLDRVNYKCLPCCLKNMASIYLTVNETSXCC 678
C+ C+D+ RSC +C TCA + D+ N C P C + + + V C
Sbjct: 125 CKICYDAPRSCFFIPCGHGFACFTCARRIAEDK-NQAC-PICRRLIHRVRRLVEPLGSSC 182
Query: 679 XXD 687
D
Sbjct: 183 GKD 185
>06_01_0424 +
3041296-3041860,3042701-3042786,3042858-3043147,
3043225-3043285,3043773-3043868,3044448-3044603,
3044811-3044987
Length = 476
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 223 CSKCYLSCETCTGPRRDQCASCPPDWRLAA 312
C +C C+ G RR + A C D +LAA
Sbjct: 88 CKECVADCDEALGRRRRRDARCGCDEKLAA 117
>03_01_0239 +
1859446-1860112,1861218-1861338,1861431-1861618,
1861710-1861804
Length = 356
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 67 YYQTAGKCSHCPHTCSSCVSRLNCTS 144
Y TAG C C +CSS +LNCT+
Sbjct: 245 YGFTAGNCIRC--SCSSTTYQLNCTA 268
>01_05_0057 +
17705023-17705143,17706186-17706538,17708002-17708044,
17708698-17709140
Length = 319
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 233 AIYRVKHVLDPGETSAHRVRLIGAWQQESAGL-SAHKTSFHGKPAADGVTTIVRTAMVXD 409
A+ R++HV PGE+SA G + S L K+ KPA V V + +
Sbjct: 109 AVKRLRHVRVPGESSAATSATTGMGESHSPPLPKVGKSPAMSKPAVHSVPVEVERIDIGE 168
Query: 410 RKN 418
+N
Sbjct: 169 PEN 171
>01_01_0138 + 1253256-1253534,1253625-1254359
Length = 337
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +1
Query: 304 LAAGECRPECPQNFFPWETSCRRCHHYCQDCHGAXP-QKCTSC 429
LA C P C P C H C CHG P +KC +C
Sbjct: 75 LAVLHC-PLCLLPLKPPTYQCAAGHLACSSCHGDVPGKKCHTC 116
>05_05_0240 +
23548408-23549408,23549882-23549980,23550282-23550354,
23550416-23550478
Length = 411
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 435 WRTGSTFLRSCTMAVLTIVVTPSA--AGFPWKEVLWALRPALS 313
WR G +++R M ++ V P+A A + W+ V+ +L LS
Sbjct: 368 WREGGSYMRGEVMGAISSPVDPAAVSAIYDWRPVVSSLARLLS 410
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 47 WQNVDAGIIKPPVNAHIAPTHV 112
WQ D ++ V AH+APT V
Sbjct: 1861 WQRADYSVLLEDVQAHVAPTDV 1882
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,518,816
Number of Sequences: 37544
Number of extensions: 564862
Number of successful extensions: 1512
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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