Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0600
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 34 0.088
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 33 0.15
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 33 0.15
At1g52310.1 68414.m05902 protein kinase family protein / C-type ... 30 1.4
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 30 1.9
At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 30 1.9
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ... 29 2.5
At5g06470.1 68418.m00725 glutaredoxin family protein similar to ... 29 3.3
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 29 3.3
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 29 3.3
At4g37110.1 68417.m05256 expressed protein 29 4.4
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 29 4.4
At1g44030.1 68414.m05079 DC1 domain-containing protein contains ... 29 4.4
At2g20000.1 68415.m02338 cell division cycle family protein / CD... 28 5.8
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 28 5.8
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 28 5.8
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD... 28 5.8
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD... 28 5.8
At1g01900.1 68414.m00107 subtilase family protein contains simil... 28 5.8
At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim... 28 7.6
At5g51340.1 68418.m06366 expressed protein 28 7.6
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 28 7.6
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 34.3 bits (75), Expect = 0.088
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 14/152 (9%)
Frame = +1
Query: 214 DGICSKCY------LSCETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRRC 375
+GIC+ C+ +C+ C D C +C + + PE P F E +
Sbjct: 21 NGICNICFKDEPVEFACDPCNF---DLCKACSDLPQKMSHHLHPEHPLEFRIGEDDQKTK 77
Query: 376 HHYCQDC----HGAXPQ-KCTSCPPHFSLXDGLCVECLXSQYYEVRTRKCRPCHDSCRSC 540
H C C GA +C+ C + L G ++ + +E + H+
Sbjct: 78 HMVCVVCGNMSSGAKYYYECSKCEIYLDL--GCALQKNIATSWEAK-EMLHYSHEHLLKR 134
Query: 541 SXSGPTS---CVTCAHPLQLDRVNYKCLPCCL 627
GP S C+ C PL + Y C+ C L
Sbjct: 135 CRPGPDSKDSCLLCEQPLSFTAICYGCVHCYL 166
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 136 CTSCTGALRLQSGTCRAICAPGYYPDDGI--CSKCY 237
CT CTG + TC A PG+Y ++ + CS CY
Sbjct: 201 CTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCY 236
>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 772
Score = 33.5 bits (73), Expect = 0.15
Identities = 36/148 (24%), Positives = 49/148 (33%), Gaps = 12/148 (8%)
Frame = +1
Query: 214 DGICSKCY------LSCETCTGPRRDQCASCPPD-WRLAAGECRPECPQNFFPWETSCRR 372
DGICS CY L+C C C+ P W + P+ P F + +
Sbjct: 21 DGICSICYKDDLVELACSPCDFSLCKGCSQLPQKVWH----DFHPDHPLEFCLHQYDQKP 76
Query: 373 CHHYCQDCHGAXP---QKCTSCPPHFSLXDGLCVECLXSQYYEVRTRKCRPCH--DSCRS 537
H C C KC C + + L + + + CH CR
Sbjct: 77 EHVVCSGCGNMTSGSFYKCKECEIYLDMGCAL-IASIFRGWDSKDLLHYSHCHLLKRCRP 135
Query: 538 CSXSGPTSCVTCAHPLQLDRVNYKCLPC 621
SC+ C PL V Y C+ C
Sbjct: 136 -GPDARGSCLLCELPLSPSSVCYGCVHC 162
>At1g52310.1 68414.m05902 protein kinase family protein / C-type
lectin domain-containing protein contains protein kinase
domain, Pfam:PF00069, PF00059 Lectin C-type domain
Length = 552
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 238 LSCETCTGP----RRDQCASCPPDWRLAAGECRPECP-QNFFPWETSCRRCHHY 384
+SCE+ +R Q SCPPDW + + + +N WE S C Y
Sbjct: 30 ISCESTQNATDFKKRSQTVSCPPDWIIGPNQTKCYAYFKNSTSWEKSEMFCRTY 83
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 556 TSCVTCAHPLQLDRVNYKCLPCC 624
T C C HP++ R+ Y C CC
Sbjct: 390 TRCEACGHPVEFGRI-YNCEECC 411
>At2g19660.1 68415.m02297 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 662
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +1
Query: 220 ICSKCYLSCETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRRC 375
ICS + SCE C +CA+ P R N ETSC C
Sbjct: 400 ICSDAFYSCENCDFILHQKCANLPRKKRHVCDNLPFTLVTNDTSDETSCDLC 451
>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 577
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 9/104 (8%)
Frame = +1
Query: 313 GECRPECPQNFFPWETSCRRCHHYCQDCHGAXPQKCTSCPPHFS--LXDGLCVECLXSQY 486
G+C+PE + + H C+DC+G +C P L ++ + +
Sbjct: 288 GKCQPENRHRLYLAKGE-EASHFICKDCNGEDHIECEKTPVEVKHLLHPKHSLQLVSQKS 346
Query: 487 YEVRTRKCRPCHDS-------CRSCSXSGPTSCVTCAHPLQLDR 597
++TRKC C + C C +C L +DR
Sbjct: 347 SIIQTRKCFCCDEDLKKIFYYCTGCDYDMNIACAEKPPVLFIDR 390
>At5g06470.1 68418.m00725 glutaredoxin family protein similar to
Glutaredoxin 3 (Grx3) (SP:P37687) {Escherichia coli
O157:H7}; contains Pfam profile PF00462: Glutaredoxin
Length = 239
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 244 CETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRRCH 378
CE+C R C+SC RL A E E N W T CR C+
Sbjct: 186 CESCENERFLICSSCNGSTRLLA-EHHDEESSNDNMW-TRCRECN 228
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +2
Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376
G WQ +SA ++A K +F GK P DGV
Sbjct: 426 GCWQDKSANITACKDTFRGKVCVCPIVDGV 455
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +2
Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376
G WQ +SA ++A K +F GK P DGV
Sbjct: 426 GCWQDKSANITACKDTFRGKVCVCPIVDGV 455
>At4g37110.1 68417.m05256 expressed protein
Length = 417
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Frame = +1
Query: 313 GECRPECPQNFFPWETSCRRCHH-----YCQDC 396
G+C +C Q + T C +C+H +C DC
Sbjct: 180 GKCCHQCRQKTLGYHTQCSQCNHSVRGQFCGDC 212
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 25 LLQGSRCVAECGRGYYQTAGKCSHCPHTCSSCVSRLNCTSCTGALRLQSGTC 180
+L S+ EC R + G C+H TCS+ C C A R SG C
Sbjct: 280 MLANSKPCPECKRPIEKNDG-CNHM--TCSAPCGHEFCWICLKAYRRHSGAC 328
>At1g44030.1 68414.m05079 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 597
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 313 GECRPECPQNFFPWETSCRRCHHYCQDCHGAXPQKCTSCPPHFS--LXDGLCVECLXSQY 486
G C+P+ + E+ H C+DC+G +C P L ++ + +
Sbjct: 308 GRCQPKNKHRLY-LESGEDASHFLCKDCNGEDHVECEKTPVEVKHLLHPKHSLQLVLQKS 366
Query: 487 YEVRTRKCRPCHDSCR 534
+TRKC C + +
Sbjct: 367 SITQTRKCFCCDEDLK 382
>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
family protein low similarity to SP|P30260|CC27_HUMAN
Protein CDC27Hs (Cell division cycle protein 27 homolog)
Homo sapiens; contains Pfam profile PF00515: TPR Domain
Length = 744
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 269 ETSAHRVRLIGAWQQESAGLSAHK-TSFHGKPAADGVTTIVRTAMVXDRKNVLPV 430
E S H R+ S+ + ++ TS H ++ I+ A+V DRKN LP+
Sbjct: 603 EFSEHHFRMAFLINPSSSVIMSYLGTSLHALKRSEEALEIMEQAIVADRKNPLPM 657
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +2
Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376
G WQ +SA ++A K +F G+ P DGV
Sbjct: 426 GCWQDKSANITACKDTFRGRVCECPTVDGV 455
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +2
Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376
G WQ +SA ++A K +F G+ P DGV
Sbjct: 426 GCWQDKSANITACKDTFRGRVCECPTVDGV 455
>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 276
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 337 VGTQACTLLLPGANQADTMRTGLSWVQYMFHTIDST*NKSRHLGN 203
+G QA L L ++ ADT+R + +F TID N + GN
Sbjct: 65 IGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGN 109
>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 277
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 337 VGTQACTLLLPGANQADTMRTGLSWVQYMFHTIDST*NKSRHLGN 203
+G QA L L ++ ADT+R + +F TID N + GN
Sbjct: 66 IGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGN 110
>At1g01900.1 68414.m00107 subtilase family protein contains
similarity to cucumisin-like serine protease GB:AAC18851
GI:3176874 from [Arabidopsis thaliana]
Length = 774
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 348 SMGNQLPTVSPLLSGLPWCXTAKMYFLSSTF 440
S GN PT S + +G PW T + TF
Sbjct: 324 SAGNSGPTASTVSNGAPWLMTVAASYTDRTF 354
>At5g66350.1 68418.m08365 zinc finger protein, putative (SHI)
similar to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702); identical to cDNA
putative zinc finger protein SHI (SHI) GI:4929802
Length = 331
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 532 RSCSXSGPTSCVTCAHPLQLDRVNYKCLPCC 624
RS S SG SC C + + D + +C CC
Sbjct: 110 RSGSGSGGPSCQDCGNQSKKDCSHMRCRTCC 140
>At5g51340.1 68418.m06366 expressed protein
Length = 726
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 19 PLLLQGSRCVAECGRGYYQTAGKC-SHCPHTCSSCVSRLNCTSCTGALRLQSGTCRAICA 195
P +LQ S C+ E RG Y + C S C + T T ++ +Q+ +C+A A
Sbjct: 443 PTILQASECMIEMLRGQYSHSVGCYSEAAFHC------IEATKLTESISMQA-SCQAFAA 495
Query: 196 PGY 204
Y
Sbjct: 496 VSY 498
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Frame = +1
Query: 214 DGICSKCY--------LSCETCTGPRRDQCASCPPDWRLAAGECRPECP 336
DG+C +C L+C TC P C S PP + A + CP
Sbjct: 12 DGVCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPP--KTLASTLQWHCP 58
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Frame = +1
Query: 214 DGICSKCY--------LSCETCTGPRRDQCASCPPDWRLAAGECRPECP 336
DG+C +C L+C TC P C S PP + A + CP
Sbjct: 12 DGVCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPP--KTLASTLQWHCP 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,000,984
Number of Sequences: 28952
Number of extensions: 415762
Number of successful extensions: 1200
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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