BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0600 (750 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 34 0.088 At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 33 0.15 At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 33 0.15 At1g52310.1 68414.m05902 protein kinase family protein / C-type ... 30 1.4 At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 30 1.9 At2g19660.1 68415.m02297 DC1 domain-containing protein contains ... 30 1.9 At1g44020.1 68414.m05078 DC1 domain-containing protein contains ... 29 2.5 At5g06470.1 68418.m00725 glutaredoxin family protein similar to ... 29 3.3 At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 29 3.3 At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 29 3.3 At4g37110.1 68417.m05256 expressed protein 29 4.4 At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 29 4.4 At1g44030.1 68414.m05079 DC1 domain-containing protein contains ... 29 4.4 At2g20000.1 68415.m02338 cell division cycle family protein / CD... 28 5.8 At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 28 5.8 At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 28 5.8 At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD... 28 5.8 At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD... 28 5.8 At1g01900.1 68414.m00107 subtilase family protein contains simil... 28 5.8 At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim... 28 7.6 At5g51340.1 68418.m06366 expressed protein 28 7.6 At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 28 7.6 At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 28 7.6 >At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative Length = 746 Score = 34.3 bits (75), Expect = 0.088 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 14/152 (9%) Frame = +1 Query: 214 DGICSKCY------LSCETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRRC 375 +GIC+ C+ +C+ C D C +C + + PE P F E + Sbjct: 21 NGICNICFKDEPVEFACDPCNF---DLCKACSDLPQKMSHHLHPEHPLEFRIGEDDQKTK 77 Query: 376 HHYCQDC----HGAXPQ-KCTSCPPHFSLXDGLCVECLXSQYYEVRTRKCRPCHDSCRSC 540 H C C GA +C+ C + L G ++ + +E + H+ Sbjct: 78 HMVCVVCGNMSSGAKYYYECSKCEIYLDL--GCALQKNIATSWEAK-EMLHYSHEHLLKR 134 Query: 541 SXSGPTS---CVTCAHPLQLDRVNYKCLPCCL 627 GP S C+ C PL + Y C+ C L Sbjct: 135 CRPGPDSKDSCLLCEQPLSFTAICYGCVHCYL 166 >At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5) [Methylovorus sp.] Length = 419 Score = 33.5 bits (73), Expect = 0.15 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +1 Query: 136 CTSCTGALRLQSGTCRAICAPGYYPDDGI--CSKCY 237 CT CTG + TC A PG+Y ++ + CS CY Sbjct: 201 CTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCY 236 >At2g21850.1 68415.m02596 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 772 Score = 33.5 bits (73), Expect = 0.15 Identities = 36/148 (24%), Positives = 49/148 (33%), Gaps = 12/148 (8%) Frame = +1 Query: 214 DGICSKCY------LSCETCTGPRRDQCASCPPD-WRLAAGECRPECPQNFFPWETSCRR 372 DGICS CY L+C C C+ P W + P+ P F + + Sbjct: 21 DGICSICYKDDLVELACSPCDFSLCKGCSQLPQKVWH----DFHPDHPLEFCLHQYDQKP 76 Query: 373 CHHYCQDCHGAXP---QKCTSCPPHFSLXDGLCVECLXSQYYEVRTRKCRPCH--DSCRS 537 H C C KC C + + L + + + CH CR Sbjct: 77 EHVVCSGCGNMTSGSFYKCKECEIYLDMGCAL-IASIFRGWDSKDLLHYSHCHLLKRCRP 135 Query: 538 CSXSGPTSCVTCAHPLQLDRVNYKCLPC 621 SC+ C PL V Y C+ C Sbjct: 136 -GPDARGSCLLCELPLSPSSVCYGCVHC 162 >At1g52310.1 68414.m05902 protein kinase family protein / C-type lectin domain-containing protein contains protein kinase domain, Pfam:PF00069, PF00059 Lectin C-type domain Length = 552 Score = 30.3 bits (65), Expect = 1.4 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Frame = +1 Query: 238 LSCETCTGP----RRDQCASCPPDWRLAAGECRPECP-QNFFPWETSCRRCHHY 384 +SCE+ +R Q SCPPDW + + + +N WE S C Y Sbjct: 30 ISCESTQNATDFKKRSQTVSCPPDWIIGPNQTKCYAYFKNSTSWEKSEMFCRTY 83 >At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B light-insensitive protein, putative similar to ULI3 (UV-B light insensitive) [Arabidopsis thaliana] GI:17225050; contains Pfam profile PF03107: DC1 domain Length = 656 Score = 29.9 bits (64), Expect = 1.9 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 Query: 556 TSCVTCAHPLQLDRVNYKCLPCC 624 T C C HP++ R+ Y C CC Sbjct: 390 TRCEACGHPVEFGRI-YNCEECC 411 >At2g19660.1 68415.m02297 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 662 Score = 29.9 bits (64), Expect = 1.9 Identities = 17/52 (32%), Positives = 20/52 (38%) Frame = +1 Query: 220 ICSKCYLSCETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRRC 375 ICS + SCE C +CA+ P R N ETSC C Sbjct: 400 ICSDAFYSCENCDFILHQKCANLPRKKRHVCDNLPFTLVTNDTSDETSCDLC 451 >At1g44020.1 68414.m05078 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 577 Score = 29.5 bits (63), Expect = 2.5 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 9/104 (8%) Frame = +1 Query: 313 GECRPECPQNFFPWETSCRRCHHYCQDCHGAXPQKCTSCPPHFS--LXDGLCVECLXSQY 486 G+C+PE + + H C+DC+G +C P L ++ + + Sbjct: 288 GKCQPENRHRLYLAKGE-EASHFICKDCNGEDHIECEKTPVEVKHLLHPKHSLQLVSQKS 346 Query: 487 YEVRTRKCRPCHDS-------CRSCSXSGPTSCVTCAHPLQLDR 597 ++TRKC C + C C +C L +DR Sbjct: 347 SIIQTRKCFCCDEDLKKIFYYCTGCDYDMNIACAEKPPVLFIDR 390 >At5g06470.1 68418.m00725 glutaredoxin family protein similar to Glutaredoxin 3 (Grx3) (SP:P37687) {Escherichia coli O157:H7}; contains Pfam profile PF00462: Glutaredoxin Length = 239 Score = 29.1 bits (62), Expect = 3.3 Identities = 18/45 (40%), Positives = 21/45 (46%) Frame = +1 Query: 244 CETCTGPRRDQCASCPPDWRLAAGECRPECPQNFFPWETSCRRCH 378 CE+C R C+SC RL A E E N W T CR C+ Sbjct: 186 CESCENERFLICSSCNGSTRLLA-EHHDEESSNDNMW-TRCRECN 228 >At2g14720.2 68415.m01657 vacuolar sorting receptor, putative identical to GB:U79960 GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = +2 Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376 G WQ +SA ++A K +F GK P DGV Sbjct: 426 GCWQDKSANITACKDTFRGKVCVCPIVDGV 455 >At2g14720.1 68415.m01656 vacuolar sorting receptor, putative identical to GB:U79960 GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 29.1 bits (62), Expect = 3.3 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = +2 Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376 G WQ +SA ++A K +F GK P DGV Sbjct: 426 GCWQDKSANITACKDTFRGKVCVCPIVDGV 455 >At4g37110.1 68417.m05256 expressed protein Length = 417 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%) Frame = +1 Query: 313 GECRPECPQNFFPWETSCRRCHH-----YCQDC 396 G+C +C Q + T C +C+H +C DC Sbjct: 180 GKCCHQCRQKTLGYHTQCSQCNHSVRGQFCGDC 212 >At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) family protein contains a Prosite:PS00518 Zinc finger, C3HC4 type (RING finger), signature and Pfam domain, PF01485: IBR domain Length = 543 Score = 28.7 bits (61), Expect = 4.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +1 Query: 25 LLQGSRCVAECGRGYYQTAGKCSHCPHTCSSCVSRLNCTSCTGALRLQSGTC 180 +L S+ EC R + G C+H TCS+ C C A R SG C Sbjct: 280 MLANSKPCPECKRPIEKNDG-CNHM--TCSAPCGHEFCWICLKAYRRHSGAC 328 >At1g44030.1 68414.m05079 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 597 Score = 28.7 bits (61), Expect = 4.4 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Frame = +1 Query: 313 GECRPECPQNFFPWETSCRRCHHYCQDCHGAXPQKCTSCPPHFS--LXDGLCVECLXSQY 486 G C+P+ + E+ H C+DC+G +C P L ++ + + Sbjct: 308 GRCQPKNKHRLY-LESGEDASHFLCKDCNGEDHVECEKTPVEVKHLLHPKHSLQLVLQKS 366 Query: 487 YEVRTRKCRPCHDSCR 534 +TRKC C + + Sbjct: 367 SITQTRKCFCCDEDLK 382 >At2g20000.1 68415.m02338 cell division cycle family protein / CDC family protein low similarity to SP|P30260|CC27_HUMAN Protein CDC27Hs (Cell division cycle protein 27 homolog) Homo sapiens; contains Pfam profile PF00515: TPR Domain Length = 744 Score = 28.3 bits (60), Expect = 5.8 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +2 Query: 269 ETSAHRVRLIGAWQQESAGLSAHK-TSFHGKPAADGVTTIVRTAMVXDRKNVLPV 430 E S H R+ S+ + ++ TS H ++ I+ A+V DRKN LP+ Sbjct: 603 EFSEHHFRMAFLINPSSSVIMSYLGTSLHALKRSEEALEIMEQAIVADRKNPLPM 657 >At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog [Arabidopsis thaliana] GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = +2 Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376 G WQ +SA ++A K +F G+ P DGV Sbjct: 426 GCWQDKSANITACKDTFRGRVCECPTVDGV 455 >At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly identical to vacuolar sorting receptor homolog [Arabidopsis thaliana] GI:1737220; contains a calcium-binding EGF-like domain signature Length = 628 Score = 28.3 bits (60), Expect = 5.8 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%) Frame = +2 Query: 299 GAWQQESAGLSAHKTSFHGK----PAADGV 376 G WQ +SA ++A K +F G+ P DGV Sbjct: 426 GCWQDKSANITACKDTFRGRVCECPTVDGV 455 >At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR) family protein contains similarity to 3-oxoacyl-[acyl-carrier protein] reductase SP:P51831 from [Bacillus subtilis] Length = 276 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 337 VGTQACTLLLPGANQADTMRTGLSWVQYMFHTIDST*NKSRHLGN 203 +G QA L L ++ ADT+R + +F TID N + GN Sbjct: 65 IGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGN 109 >At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR) family protein contains similarity to 3-oxoacyl-[acyl-carrier protein] reductase SP:P51831 from [Bacillus subtilis] Length = 277 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 337 VGTQACTLLLPGANQADTMRTGLSWVQYMFHTIDST*NKSRHLGN 203 +G QA L L ++ ADT+R + +F TID N + GN Sbjct: 66 IGVQAAALELDVSSDADTIRKAVKEAWEIFGTIDVLINNAGIRGN 110 >At1g01900.1 68414.m00107 subtilase family protein contains similarity to cucumisin-like serine protease GB:AAC18851 GI:3176874 from [Arabidopsis thaliana] Length = 774 Score = 28.3 bits (60), Expect = 5.8 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 348 SMGNQLPTVSPLLSGLPWCXTAKMYFLSSTF 440 S GN PT S + +G PW T + TF Sbjct: 324 SAGNSGPTASTVSNGAPWLMTVAASYTDRTF 354 >At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) similar to lateral root primordium 1 (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam profile PF05142: Domain of unknown function (DUF702); identical to cDNA putative zinc finger protein SHI (SHI) GI:4929802 Length = 331 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +1 Query: 532 RSCSXSGPTSCVTCAHPLQLDRVNYKCLPCC 624 RS S SG SC C + + D + +C CC Sbjct: 110 RSGSGSGGPSCQDCGNQSKKDCSHMRCRTCC 140 >At5g51340.1 68418.m06366 expressed protein Length = 726 Score = 27.9 bits (59), Expect = 7.6 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +1 Query: 19 PLLLQGSRCVAECGRGYYQTAGKC-SHCPHTCSSCVSRLNCTSCTGALRLQSGTCRAICA 195 P +LQ S C+ E RG Y + C S C + T T ++ +Q+ +C+A A Sbjct: 443 PTILQASECMIEMLRGQYSHSVGCYSEAAFHC------IEATKLTESISMQA-SCQAFAA 495 Query: 196 PGY 204 Y Sbjct: 496 VSY 498 >At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) family protein low similarity to nuclear protein np95 [Mus musculus] GI:4220590; contains Pfam profiles PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF00628: PHD-finger Length = 642 Score = 27.9 bits (59), Expect = 7.6 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Frame = +1 Query: 214 DGICSKCY--------LSCETCTGPRRDQCASCPPDWRLAAGECRPECP 336 DG+C +C L+C TC P C S PP + A + CP Sbjct: 12 DGVCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPP--KTLASTLQWHCP 58 >At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) family protein low similarity to nuclear protein np95 [Mus musculus] GI:4220590; contains Pfam profiles PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF00628: PHD-finger Length = 645 Score = 27.9 bits (59), Expect = 7.6 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Frame = +1 Query: 214 DGICSKCY--------LSCETCTGPRRDQCASCPPDWRLAAGECRPECP 336 DG+C +C L+C TC P C S PP + A + CP Sbjct: 12 DGVCMRCKSNPPPEESLTCGTCVTPWHVSCLSSPP--KTLASTLQWHCP 58 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,000,984 Number of Sequences: 28952 Number of extensions: 415762 Number of successful extensions: 1200 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1198 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1663169840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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