SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0599
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CZC8 Cluster: Chromosome undetermined scaffold_32, wh...    36   1.4  
UniRef50_Q9G802 Cluster: NADH-ubiquinone oxidoreductase chain 4L...    33   7.5  

>UniRef50_A0CZC8 Cluster: Chromosome undetermined scaffold_32, whole
           genome shotgun sequence; n=3; Oligohymenophorea|Rep:
           Chromosome undetermined scaffold_32, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 289

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = -2

Query: 643 TIIKAGNVTFGQLLVNQKNEIIDFVFH*QSQNSXXRHLKINNRLSINLYLMQVLNRIL*R 464
           T+I+ G V   QL++N   EI++++ +  SQ+        NN   + +YL  ++  I+  
Sbjct: 215 TLIQQGKVKPNQLIINNLQEILNYLPNLGSQDVVQAFTTKNNDNMLTIYLASLMRSIIAY 274

Query: 463 RRLYSNQS 440
             L +NQ+
Sbjct: 275 HNLINNQA 282


>UniRef50_Q9G802 Cluster: NADH-ubiquinone oxidoreductase chain 4L;
           n=1; Triatoma dimidiata|Rep: NADH-ubiquinone
           oxidoreductase chain 4L - Triatoma dimidiata (Kissing
           bug)
          Length = 97

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 302 FCFFVNLSIFRFNYVIKMVYQTFSICKGAL 213
           F FF  L +F  +Y   +V+ TFS+C+GA+
Sbjct: 43  FLFFSFLVMFNLSYYFILVFLTFSVCEGAM 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,967,443
Number of Sequences: 1657284
Number of extensions: 9173912
Number of successful extensions: 13896
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13895
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -