Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0598
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    37   0.41 
UniRef50_Q2LVP4 Cluster: Dolichyl-phosphate-mannose-protein mann...    35   1.7  
UniRef50_Q4YX08 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.1 bits (82), Expect = 0.41
 Identities = 18/22 (81%), Positives = 18/22 (81%)
 Frame = +3

Query: 240 FFLLXSVDELTAHLVLSGY*SP 305
           F LL  VDELTAHLVLSGY SP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q2LVP4 Cluster: Dolichyl-phosphate-mannose-protein
           mannosyltransferase proteins; n=1; Syntrophus
           aciditrophicus SB|Rep:
           Dolichyl-phosphate-mannose-protein mannosyltransferase
           proteins - Syntrophus aciditrophicus (strain SB)
          Length = 559

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +2

Query: 260 GRAHSPPGVKWLLKPIDIYCILFKG*LVFM*KQQRLRYNCFCGILVVVLFNTSWILSRYY 439
           GR +SP     +L PI I  +LF   +    +++ + ++ F G  ++V F T  I +RY 
Sbjct: 305 GRDNSPQYFDGVLNPILIVFLLFSF-INQQFRKEAVLFSIFAGFFIIVAFFTEAIRTRYI 363

Query: 440 LPFYSQKKSVCIQLFPNL 493
           LP       +C+    NL
Sbjct: 364 LPVVPFLVIMCVYGMRNL 381


>UniRef50_Q4YX08 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 60

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = -1

Query: 652 IINMHLI*GNFGRNIIIYFTRVIFCKTTQYILLIKNWIKLKNNISYIYLW 503
           I  +HL   N  +N I +   +IF  + Q I+ + N+I LKNNI +I+ +
Sbjct: 10  IYTLHLTKNNSDKNQINFI--LIFFYSKQIIIWLNNYILLKNNIIFIFFF 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,533,385
Number of Sequences: 1657284
Number of extensions: 13043087
Number of successful extensions: 24678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24675
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)