Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0598
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  

>SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 248 QKKIYTNASVFRIRQLVNISKALRQKNEANESFNKIPK*TKKHRMRFLQ 102
           ++ +   A  + I  LV   K ++++ EA E+  KIP   KKH  R LQ
Sbjct: 547 EEGVLEEAEFYSIEPLV---KMIKERIEAREASRKIPLQAKKHVYRVLQ 592


>SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 130 VYFGILLNDSFASFFCLKALEILTS*---RIRNTDAFVYIFFCLXRWTS 267
           ++  ++L  SF SF C+    +  +    R RNT   +YI F +  W S
Sbjct: 176 IFLSVILGASFFSFVCISVERMHATVWPLRHRNTKPRMYIVFIMITWLS 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,880,651
Number of Sequences: 59808
Number of extensions: 422252
Number of successful extensions: 707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)