Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0598
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81124-14|CAJ85776.1|  360|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81124-13|CAJ85775.1|  362|Caenorhabditis elegans Hypothetical p...    28   7.4  
AF022971-10|AAG23971.2|  338|Caenorhabditis elegans Hypothetical...    28   7.4  
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p...    27   9.8  
U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ...    27   9.8  

>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 377 CFCGILVVVLFNTSWILSRYYLPFYSQKKSVC 472
           C CGIL+ V+ N + ++++++L  Y    + C
Sbjct: 442 CECGILIAVIENITALITQFFLMCYLGVNAAC 473


>Z81124-14|CAJ85776.1|  360|Caenorhabditis elegans Hypothetical
           protein T21B4.4b protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 IHLLHSSVLRLWKY*QVDEYETQTRSYIFFFA 250
           IH+  S++L LW Y +     T T +YIF  A
Sbjct: 16  IHISFSNLLVLWVYVRSKHVRTVTNTYIFSLA 47


>Z81124-13|CAJ85775.1|  362|Caenorhabditis elegans Hypothetical
           protein T21B4.4a protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 IHLLHSSVLRLWKY*QVDEYETQTRSYIFFFA 250
           IH+  S++L LW Y +     T T +YIF  A
Sbjct: 16  IHISFSNLLVLWVYVRSKHVRTVTNTYIFSLA 47


>AF022971-10|AAG23971.2|  338|Caenorhabditis elegans Hypothetical
           protein C31B8.12 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +2

Query: 455 QKKSVCIQLFPNLXTFP*INIRNVVF*FNPIFYQQNILCRLAKNHSC----KINNNIP 616
           QK  VC ++F ++   P  N+  V +   P   ++NI+  L   H      K+N  +P
Sbjct: 113 QKTEVCDKVFIDVDVVPMANLHEVKWTILPTCKEENIMVTLGIGHDTMAEEKLNRTLP 170


>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 257 RXKQKKIYTNASVFRIRQLVNISKALRQKNEANESFNKIPK*TKKHRMRFLQ 102
           R K+  IY N SVF ++ +    + LR+ ++ +  +   PK  +KH +  LQ
Sbjct: 505 RHKKLAIYMNTSVFHLKMIDLQDEMLRETSDLS-LYCFYPKLAEKHWLNCLQ 555


>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
           protein F28D1.10 protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 257 RXKQKKIYTNASVFRIRQLVNISKALRQKNEANESFNKIPK*TKKHRMRFLQ 102
           R K+  IY N SVF ++ +    + LR+ ++ +  +   PK  +KH +  LQ
Sbjct: 505 RHKKLAIYMNTSVFHLKMIDLQDEMLRETSDLS-LYCFYPKLAEKHWLNCLQ 555


>U23450-6|AAK31469.1|  790|Caenorhabditis elegans Hypothetical
           protein C30B5.5 protein.
          Length = 790

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 365 LRYNCFCGILVVVLFNTSWILSRYYLPFYSQK 460
           LR   F  + +V     +WILS Y+L  +SQK
Sbjct: 725 LRQKVFIALCLVFCVVIAWILSCYFLKKHSQK 756


>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
           protein.
          Length = 1141

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 257 RXKQKKIYTNASVFRIRQLVNISKALRQKNEANESFNKIPK*TKKHRMRFLQ 102
           R K+  IY N SVF ++ +    + LR+ ++ +  +   PK  +KH +  LQ
Sbjct: 505 RHKKLAIYMNTSVFHLKMIDLQDEMLRETSDLS-LYCFYPKLAEKHWLNCLQ 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,039,553
Number of Sequences: 27780
Number of extensions: 337975
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)