Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0597
         (343 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.16 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   6.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   6.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   6.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   6.1  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   8.1  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    20   8.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   8.1  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 233 RSESAVFVKVEPLAXDRHQKYVCGMYASFSLYGLASSHG 117
           +S ++ +    PL+  +H   +CG  AS   YG+ S  G
Sbjct: 67  KSSTSPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEG 105


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 176 FGGDHXPMVPPLQKPLI 226
           F  +H P+ PP  +PL+
Sbjct: 99  FAYNHNPLTPPNSEPLV 115


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 120  VGTCQPIQRETSVHATHVFLVAITSQWF 203
            VGT   ++ +     + +FL+A+T  +F
Sbjct: 989  VGTALQLREDGVGSPSAIFLIAMTGSFF 1016


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 120  VGTCQPIQRETSVHATHVFLVAITSQWF 203
            VGT   ++ +     + +FL+A+T  +F
Sbjct: 989  VGTALQLREDGVGSPSAIFLIAMTGSFF 1016


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 120  VGTCQPIQRETSVHATHVFLVAITSQWF 203
            VGT   ++ +     + +FL+A+T  +F
Sbjct: 989  VGTALQLREDGVGSPSAIFLIAMTGSFF 1016


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 120  VGTCQPIQRETSVHATHVFLVAITSQWF 203
            VGT   ++ +     + +FL+A+T  +F
Sbjct: 989  VGTALQLREDGVGSPSAIFLIAMTGSFF 1016


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 18  ALIPAPVQVMWLGYPGTSGASYMDYL 95
           A +PA  + +  GY     + Y+D++
Sbjct: 678 AAVPASFEAIAAGYDVPEISKYLDFI 703


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 242 NFCRSESAVFVKVEPLAXDRHQKYVCGMY 156
           N CRS  A+ +  E     R ++++ G+Y
Sbjct: 97  NTCRSALALLLSPEVGKDHRIKRFLRGVY 125


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 263 SQIVGGFNFCRSESAVFVKVEPLAXDR 183
           S+   GF+ C SE   F  ++P+   R
Sbjct: 108 SKFRAGFSECASEVGRFPGLDPVVKRR 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,973
Number of Sequences: 336
Number of extensions: 1924
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)