Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0597
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   0.15 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   1.8  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   2.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   5.6  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    23   9.8  

>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 115 HPWELASPYSEKLAYMPHTYFW 180
           HP E+  PY E  A +PH  FW
Sbjct: 137 HPIEVVGPYIEDEAIIPHKGFW 158


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 197 LAXDRHQKYVCGMYASFSLYGLASSH 120
           +A   H+ Y+CG+    +LY L  SH
Sbjct: 202 VALSSHKNYICGLTNDNNLYILQHSH 227


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +1

Query: 112 RHPWELASPYSEKLAYMPHT-YFWW 183
           R  WE A    E +   PH  +FWW
Sbjct: 133 RESWEKADYIMEAMKKYPHAEWFWW 157


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 60  PGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHV 173
           P   G +  ++ V +AVT+P  T     +ET+  +  V
Sbjct: 434 PVAVGGTTAEHPVQEAVTAPTETAHDFSKETTTASKRV 471


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 830

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 60 DTRATLPGPGLVSKRK 13
          D+  TLPGPG + K+K
Sbjct: 25 DSICTLPGPGSLLKKK 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,504,627
Number of Sequences: 5004
Number of extensions: 29861
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)