Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0597
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 72 1e-13
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 70 4e-13
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 49 1e-06
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074... 28 2.2
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 27 2.9
03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108,887... 27 3.9
08_01_0713 - 6307737-6308789,6308886-6309056 27 5.1
01_07_0155 - 41541475-41541831,41541922-41542051,41542144-415424... 27 5.1
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 27 5.1
05_01_0198 + 1429396-1430640 26 6.7
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 26 6.7
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 26 6.7
01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453... 26 8.9
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +3
Query: 3 RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTC-QPIQRETSVHATHVFL 179
RNEIFAL PAP+QV ++G+PGT+GA+Y+DYLVTD SP TC I E VH H +
Sbjct: 707 RNEIFALQPAPIQVSYMGFPGTTGAAYIDYLVTDEFVSP--TCYSHIYSEKLVHLPHCYF 764
Query: 180 V 182
V
Sbjct: 765 V 765
>01_06_1788 -
39873900-39873986,39874009-39874137,39874180-39874246,
39874874-39874909,39875146-39875292,39875772-39875899,
39876349-39876435,39876523-39876633,39877433-39877600,
39877665-39877749,39877826-39877942,39878051-39878127,
39879981-39880077,39880175-39880377,39880519-39880645,
39880687-39880754,39880855-39880908,39880990-39881108,
39881651-39881729,39881803-39881865,39882113-39882232,
39882718-39882774,39882872-39882988,39883122-39883172,
39883262-39883360,39883438-39883583,39883740-39883887
Length = 928
Score = 70.1 bits (164), Expect = 4e-13
Identities = 33/60 (55%), Positives = 41/60 (68%)
Frame = +3
Query: 3 RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
RNEIFAL PAP+QV ++G+PGT+GA Y+DYLVTD SP+ I E VH H + V
Sbjct: 668 RNEIFALQPAPIQVSYMGFPGTTGADYIDYLVTDEFVSPL-KFSHIYSEKLVHLPHCYFV 726
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 48.8 bits (111), Expect = 1e-06
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 27 PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQ 134
PAP+QV W+GYP T+G +DY +TD++ P T Q
Sbjct: 577 PAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQ 612
>04_03_1026 -
21806124-21806225,21807017-21807055,21807307-21807407,
21807924-21808185,21808334-21808458,21809058-21809637
Length = 402
Score = 27.9 bits (59), Expect = 2.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 208 RWNHWLVIATKNTCVACTLVSRCMG 134
++NH + K C++C+ S C G
Sbjct: 359 KYNHIAIATNKRNCLSCSYTSNCTG 383
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +3
Query: 12 IFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGT 128
+F L+ V WLGY S Y L +T GT
Sbjct: 652 VFHLVEMVVSSSWLGYEALSQVEYTHMLTVSLLTVSPGT 690
>03_02_0494 -
8873285-8873777,8873926-8874275,8874842-8875108,
8875616-8875897
Length = 463
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 127 VPTGDVTASVTK*SM*LAPLVPGYPSHITWTGAGIKAKISFR 2
+P GD+T +V+ +A L P H+TW G + K FR
Sbjct: 103 LPAGDITQTVSDDKADIAVLEE--PEHLTWYHHGRRWKNKFR 142
>08_01_0713 - 6307737-6308789,6308886-6309056
Length = 407
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 251 GGFNFCRSESAVFVKVEPLAXDRHQKYVC 165
GG + S +A F+++ + D+ ++YVC
Sbjct: 340 GGIDLQLSRNATFMEITSMNGDQEERYVC 368
>01_07_0155 -
41541475-41541831,41541922-41542051,41542144-41542433,
41542526-41542707,41542788-41543007,41543117-41543135,
41543222-41543382
Length = 452
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116
WLV+A N CVA ++ C + G
Sbjct: 5 WLVVAVFNCCVALSMAEICSAYPTSGG 31
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 133 SPYSEKLAYMPHTYFWWRSXANGSTFTKTA 222
+P +E +A PH WW ++ + KTA
Sbjct: 183 TPMAELVASRPHVKAWWDDISSRPAWKKTA 212
>05_01_0198 + 1429396-1430640
Length = 414
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +1
Query: 124 ELASPYSEKLAYMPHTYFWWRSXANGSTFTKTAD-SERQKLNPPT---IWE 264
E A P++ K Y+P W+ A G AD S + PP+ IWE
Sbjct: 259 EWALPFAGKAEYVPELKLWFGIAAKGECSPCAADLSPVARGEPPSPGYIWE 309
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 259 WEWXGQWCWD*PEPXGAP 312
W W W W P P AP
Sbjct: 39 WPWPWPWSWSWPPPPRAP 56
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116
WLV+A N CVA ++ C + G
Sbjct: 449 WLVVAAFNGCVALSMAEICSAYPTSGG 475
>01_07_0156 -
41544396-41544755,41544854-41544983,41545085-41545374,
41545482-41545663,41545784-41546003,41546121-41546139,
41546394-41546654,41546775-41546863
Length = 516
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116
WLV+A N CVA ++ C + G
Sbjct: 68 WLVVALFNGCVALSMAEICSAYPTSGG 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,815,744
Number of Sequences: 37544
Number of extensions: 240629
Number of successful extensions: 527
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -