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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0597
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473...    72   1e-13
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742...    70   4e-13
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863...    49   1e-06
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074...    28   2.2  
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324...    27   2.9  
03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108,887...    27   3.9  
08_01_0713 - 6307737-6308789,6308886-6309056                           27   5.1  
01_07_0155 - 41541475-41541831,41541922-41542051,41542144-415424...    27   5.1  
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     27   5.1  
05_01_0198 + 1429396-1430640                                           26   6.7  
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052...    26   6.7  
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642...    26   6.7  
01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453...    26   8.9  

>02_03_0272 -
           17146578-17146691,17146806-17146926,17147260-17147365,
           17147469-17147551,17147688-17147815,17147897-17147983,
           17148064-17148174,17148502-17148669,17148753-17148837,
           17148921-17149037,17149127-17149203,17149299-17149370,
           17150538-17150634,17150750-17150952,17151115-17151217,
           17151324-17151391,17151461-17151514,17151595-17151704,
           17151982-17152060,17152171-17152233,17153410-17153529,
           17153913-17153969,17154071-17154187,17156426-17156476,
           17156591-17156689,17156787-17156935,17158090-17158312
          Length = 953

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +3

Query: 3   RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTC-QPIQRETSVHATHVFL 179
           RNEIFAL PAP+QV ++G+PGT+GA+Y+DYLVTD   SP  TC   I  E  VH  H + 
Sbjct: 707 RNEIFALQPAPIQVSYMGFPGTTGAAYIDYLVTDEFVSP--TCYSHIYSEKLVHLPHCYF 764

Query: 180 V 182
           V
Sbjct: 765 V 765


>01_06_1788 -
           39873900-39873986,39874009-39874137,39874180-39874246,
           39874874-39874909,39875146-39875292,39875772-39875899,
           39876349-39876435,39876523-39876633,39877433-39877600,
           39877665-39877749,39877826-39877942,39878051-39878127,
           39879981-39880077,39880175-39880377,39880519-39880645,
           39880687-39880754,39880855-39880908,39880990-39881108,
           39881651-39881729,39881803-39881865,39882113-39882232,
           39882718-39882774,39882872-39882988,39883122-39883172,
           39883262-39883360,39883438-39883583,39883740-39883887
          Length = 928

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 33/60 (55%), Positives = 41/60 (68%)
 Frame = +3

Query: 3   RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
           RNEIFAL PAP+QV ++G+PGT+GA Y+DYLVTD   SP+     I  E  VH  H + V
Sbjct: 668 RNEIFALQPAPIQVSYMGFPGTTGADYIDYLVTDEFVSPL-KFSHIYSEKLVHLPHCYFV 726


>08_02_1577 +
           27985066-27985434,27985520-27985594,27986159-27986320,
           27986415-27986590,27986681-27986756,27987154-27987282,
           27987363-27987482,27987734-27987815,27988016-27988110,
           27988427-27988491,27988604-27988802,27989426-27989620,
           27989866-27989960,27990059-27990194,27990265-27990482,
           27990729-27990856,27991148-27991617
          Length = 929

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = +3

Query: 27  PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQ 134
           PAP+QV W+GYP T+G   +DY +TD++  P  T Q
Sbjct: 577 PAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQ 612


>04_03_1026 -
           21806124-21806225,21807017-21807055,21807307-21807407,
           21807924-21808185,21808334-21808458,21809058-21809637
          Length = 402

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -1

Query: 208 RWNHWLVIATKNTCVACTLVSRCMG 134
           ++NH  +   K  C++C+  S C G
Sbjct: 359 KYNHIAIATNKRNCLSCSYTSNCTG 383


>09_03_0179 -
           13131404-13131514,13131834-13131920,13132316-13132448,
           13133079-13133319,13133423-13133540,13133546-13133731,
           13133864-13134049,13134443-13134652,13135171-13135347,
           13135823-13135964,13136385-13136927,13137565-13138022
          Length = 863

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = +3

Query: 12  IFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGT 128
           +F L+   V   WLGY   S   Y   L    +T   GT
Sbjct: 652 VFHLVEMVVSSSWLGYEALSQVEYTHMLTVSLLTVSPGT 690


>03_02_0494 -
           8873285-8873777,8873926-8874275,8874842-8875108,
           8875616-8875897
          Length = 463

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 127 VPTGDVTASVTK*SM*LAPLVPGYPSHITWTGAGIKAKISFR 2
           +P GD+T +V+     +A L    P H+TW   G + K  FR
Sbjct: 103 LPAGDITQTVSDDKADIAVLEE--PEHLTWYHHGRRWKNKFR 142


>08_01_0713 - 6307737-6308789,6308886-6309056
          Length = 407

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 251 GGFNFCRSESAVFVKVEPLAXDRHQKYVC 165
           GG +   S +A F+++  +  D+ ++YVC
Sbjct: 340 GGIDLQLSRNATFMEITSMNGDQEERYVC 368


>01_07_0155 -
           41541475-41541831,41541922-41542051,41542144-41542433,
           41542526-41542707,41542788-41543007,41543117-41543135,
           41543222-41543382
          Length = 452

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116
           WLV+A  N CVA ++   C  +    G
Sbjct: 5   WLVVAVFNCCVALSMAEICSAYPTSGG 31


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 133 SPYSEKLAYMPHTYFWWRSXANGSTFTKTA 222
           +P +E +A  PH   WW   ++   + KTA
Sbjct: 183 TPMAELVASRPHVKAWWDDISSRPAWKKTA 212


>05_01_0198 + 1429396-1430640
          Length = 414

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +1

Query: 124 ELASPYSEKLAYMPHTYFWWRSXANGSTFTKTAD-SERQKLNPPT---IWE 264
           E A P++ K  Y+P    W+   A G      AD S   +  PP+   IWE
Sbjct: 259 EWALPFAGKAEYVPELKLWFGIAAKGECSPCAADLSPVARGEPPSPGYIWE 309


>02_03_0235 -
           16702768-16702956,16703956-16704492,16705084-16705233,
           16705310-16705625,16707005-16707286,16707895-16707971,
           16708121-16708186,16708700-16709246,16709435-16709565,
           16709642-16709746,16709859-16710039,16710123-16710185,
           16711000-16711109,16711576-16711638,16711859-16712191
          Length = 1049

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 259 WEWXGQWCWD*PEPXGAP 312
           W W   W W  P P  AP
Sbjct: 39  WPWPWPWSWSWPPPPRAP 56


>01_07_0160 -
           41563109-41563468,41563566-41563985,41564082-41564263,
           41564362-41564542,41565066-41565084,41565185-41565445,
           41566140-41566253,41566264-41566331,41566890-41567018,
           41567141-41567245,41567317-41567456,41567519-41567687,
           41567824-41567900,41568133-41568187,41568660-41568705,
           41568806-41568894,41568996-41569061,41569360-41569425,
           41569817-41569906,41570009-41570026
          Length = 884

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116
           WLV+A  N CVA ++   C  +    G
Sbjct: 449 WLVVAAFNGCVALSMAEICSAYPTSGG 475


>01_07_0156 -
           41544396-41544755,41544854-41544983,41545085-41545374,
           41545482-41545663,41545784-41546003,41546121-41546139,
           41546394-41546654,41546775-41546863
          Length = 516

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116
           WLV+A  N CVA ++   C  +    G
Sbjct: 68  WLVVALFNGCVALSMAEICSAYPTSGG 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,815,744
Number of Sequences: 37544
Number of extensions: 240629
Number of successful extensions: 527
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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