BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0597 (343 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 72 1e-13 01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742... 70 4e-13 08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 49 1e-06 04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074... 28 2.2 09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 27 2.9 03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108,887... 27 3.9 08_01_0713 - 6307737-6308789,6308886-6309056 27 5.1 01_07_0155 - 41541475-41541831,41541922-41542051,41542144-415424... 27 5.1 01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 27 5.1 05_01_0198 + 1429396-1430640 26 6.7 02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 26 6.7 01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 26 6.7 01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453... 26 8.9 >02_03_0272 - 17146578-17146691,17146806-17146926,17147260-17147365, 17147469-17147551,17147688-17147815,17147897-17147983, 17148064-17148174,17148502-17148669,17148753-17148837, 17148921-17149037,17149127-17149203,17149299-17149370, 17150538-17150634,17150750-17150952,17151115-17151217, 17151324-17151391,17151461-17151514,17151595-17151704, 17151982-17152060,17152171-17152233,17153410-17153529, 17153913-17153969,17154071-17154187,17156426-17156476, 17156591-17156689,17156787-17156935,17158090-17158312 Length = 953 Score = 71.7 bits (168), Expect = 1e-13 Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%) Frame = +3 Query: 3 RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTC-QPIQRETSVHATHVFL 179 RNEIFAL PAP+QV ++G+PGT+GA+Y+DYLVTD SP TC I E VH H + Sbjct: 707 RNEIFALQPAPIQVSYMGFPGTTGAAYIDYLVTDEFVSP--TCYSHIYSEKLVHLPHCYF 764 Query: 180 V 182 V Sbjct: 765 V 765 >01_06_1788 - 39873900-39873986,39874009-39874137,39874180-39874246, 39874874-39874909,39875146-39875292,39875772-39875899, 39876349-39876435,39876523-39876633,39877433-39877600, 39877665-39877749,39877826-39877942,39878051-39878127, 39879981-39880077,39880175-39880377,39880519-39880645, 39880687-39880754,39880855-39880908,39880990-39881108, 39881651-39881729,39881803-39881865,39882113-39882232, 39882718-39882774,39882872-39882988,39883122-39883172, 39883262-39883360,39883438-39883583,39883740-39883887 Length = 928 Score = 70.1 bits (164), Expect = 4e-13 Identities = 33/60 (55%), Positives = 41/60 (68%) Frame = +3 Query: 3 RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182 RNEIFAL PAP+QV ++G+PGT+GA Y+DYLVTD SP+ I E VH H + V Sbjct: 668 RNEIFALQPAPIQVSYMGFPGTTGADYIDYLVTDEFVSPL-KFSHIYSEKLVHLPHCYFV 726 >08_02_1577 + 27985066-27985434,27985520-27985594,27986159-27986320, 27986415-27986590,27986681-27986756,27987154-27987282, 27987363-27987482,27987734-27987815,27988016-27988110, 27988427-27988491,27988604-27988802,27989426-27989620, 27989866-27989960,27990059-27990194,27990265-27990482, 27990729-27990856,27991148-27991617 Length = 929 Score = 48.8 bits (111), Expect = 1e-06 Identities = 18/36 (50%), Positives = 25/36 (69%) Frame = +3 Query: 27 PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQ 134 PAP+QV W+GYP T+G +DY +TD++ P T Q Sbjct: 577 PAPIQVTWIGYPNTTGLPTIDYRITDSLADPPDTTQ 612 >04_03_1026 - 21806124-21806225,21807017-21807055,21807307-21807407, 21807924-21808185,21808334-21808458,21809058-21809637 Length = 402 Score = 27.9 bits (59), Expect = 2.2 Identities = 8/25 (32%), Positives = 14/25 (56%) Frame = -1 Query: 208 RWNHWLVIATKNTCVACTLVSRCMG 134 ++NH + K C++C+ S C G Sbjct: 359 KYNHIAIATNKRNCLSCSYTSNCTG 383 >09_03_0179 - 13131404-13131514,13131834-13131920,13132316-13132448, 13133079-13133319,13133423-13133540,13133546-13133731, 13133864-13134049,13134443-13134652,13135171-13135347, 13135823-13135964,13136385-13136927,13137565-13138022 Length = 863 Score = 27.5 bits (58), Expect = 2.9 Identities = 13/39 (33%), Positives = 16/39 (41%) Frame = +3 Query: 12 IFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGT 128 +F L+ V WLGY S Y L +T GT Sbjct: 652 VFHLVEMVVSSSWLGYEALSQVEYTHMLTVSLLTVSPGT 690 >03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108, 8875616-8875897 Length = 463 Score = 27.1 bits (57), Expect = 3.9 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -1 Query: 127 VPTGDVTASVTK*SM*LAPLVPGYPSHITWTGAGIKAKISFR 2 +P GD+T +V+ +A L P H+TW G + K FR Sbjct: 103 LPAGDITQTVSDDKADIAVLEE--PEHLTWYHHGRRWKNKFR 142 >08_01_0713 - 6307737-6308789,6308886-6309056 Length = 407 Score = 26.6 bits (56), Expect = 5.1 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = -3 Query: 251 GGFNFCRSESAVFVKVEPLAXDRHQKYVC 165 GG + S +A F+++ + D+ ++YVC Sbjct: 340 GGIDLQLSRNATFMEITSMNGDQEERYVC 368 >01_07_0155 - 41541475-41541831,41541922-41542051,41542144-41542433, 41542526-41542707,41542788-41543007,41543117-41543135, 41543222-41543382 Length = 452 Score = 26.6 bits (56), Expect = 5.1 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116 WLV+A N CVA ++ C + G Sbjct: 5 WLVVAVFNCCVALSMAEICSAYPTSGG 31 >01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 Length = 221 Score = 26.6 bits (56), Expect = 5.1 Identities = 10/30 (33%), Positives = 16/30 (53%) Frame = +1 Query: 133 SPYSEKLAYMPHTYFWWRSXANGSTFTKTA 222 +P +E +A PH WW ++ + KTA Sbjct: 183 TPMAELVASRPHVKAWWDDISSRPAWKKTA 212 >05_01_0198 + 1429396-1430640 Length = 414 Score = 26.2 bits (55), Expect = 6.7 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Frame = +1 Query: 124 ELASPYSEKLAYMPHTYFWWRSXANGSTFTKTAD-SERQKLNPPT---IWE 264 E A P++ K Y+P W+ A G AD S + PP+ IWE Sbjct: 259 EWALPFAGKAEYVPELKLWFGIAAKGECSPCAADLSPVARGEPPSPGYIWE 309 >02_03_0235 - 16702768-16702956,16703956-16704492,16705084-16705233, 16705310-16705625,16707005-16707286,16707895-16707971, 16708121-16708186,16708700-16709246,16709435-16709565, 16709642-16709746,16709859-16710039,16710123-16710185, 16711000-16711109,16711576-16711638,16711859-16712191 Length = 1049 Score = 26.2 bits (55), Expect = 6.7 Identities = 8/18 (44%), Positives = 8/18 (44%) Frame = +1 Query: 259 WEWXGQWCWD*PEPXGAP 312 W W W W P P AP Sbjct: 39 WPWPWPWSWSWPPPPRAP 56 >01_07_0160 - 41563109-41563468,41563566-41563985,41564082-41564263, 41564362-41564542,41565066-41565084,41565185-41565445, 41566140-41566253,41566264-41566331,41566890-41567018, 41567141-41567245,41567317-41567456,41567519-41567687, 41567824-41567900,41568133-41568187,41568660-41568705, 41568806-41568894,41568996-41569061,41569360-41569425, 41569817-41569906,41570009-41570026 Length = 884 Score = 26.2 bits (55), Expect = 6.7 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116 WLV+A N CVA ++ C + G Sbjct: 449 WLVVAAFNGCVALSMAEICSAYPTSGG 475 >01_07_0156 - 41544396-41544755,41544854-41544983,41545085-41545374, 41545482-41545663,41545784-41546003,41546121-41546139, 41546394-41546654,41546775-41546863 Length = 516 Score = 25.8 bits (54), Expect = 8.9 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 196 WLVIATKNTCVACTLVSRCMGWQVPTG 116 WLV+A N CVA ++ C + G Sbjct: 68 WLVVALFNGCVALSMAEICSAYPTSGG 94 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,815,744 Number of Sequences: 37544 Number of extensions: 240629 Number of successful extensions: 527 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 516 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 524 length of database: 14,793,348 effective HSP length: 73 effective length of database: 12,052,636 effective search space used: 482105440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -