BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0597 (343 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 9e-15 SB_49086| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.99 SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 26 7.0 SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7) 26 7.0 >SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 927 Score = 75.8 bits (178), Expect = 9e-15 Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Frame = +3 Query: 3 RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182 RNEIFAL PA +Q MWLGYPGTSGA YMDY++TD TSP+ E + + F V Sbjct: 630 RNEIFALRPAAIQAMWLGYPGTSGAPYMDYIITDKTTSPLEHADQYS-EKLAYMPNTFFV 688 Query: 183 AITSQWF-HLYKN 218 Q F HL +N Sbjct: 689 GDHKQMFPHLMQN 701 >SB_49086| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 123 Score = 29.1 bits (62), Expect = 0.99 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +3 Query: 24 IPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVH 161 I PV ++WL PG+S S+ L+T A P P+ R + H Sbjct: 42 IGLPVFIIWLAKPGSSLFSWHPILMTFAGGGPGPLATPLIRALASH 87 >SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) Length = 650 Score = 26.2 bits (55), Expect = 7.0 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +3 Query: 18 ALIPAPVQVMWLGYPGTSGASYMDYLVT 101 A++ + +V WL PGT+GAS+ + T Sbjct: 251 AVVASLQKVRWLEAPGTAGASFSSRVQT 278 >SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7) Length = 426 Score = 26.2 bits (55), Expect = 7.0 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +1 Query: 163 PHTYFWWRSXANGSTFTKTADSERQKLNPPTIW 261 P + WWR+ + T+TAD+ + N P W Sbjct: 134 PTDWHWWRT---ANILTRTADAFNELRNSPFSW 163 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,696,734 Number of Sequences: 59808 Number of extensions: 242786 Number of successful extensions: 418 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 416 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 498218920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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