Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0597
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   9e-15
SB_49086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.99 
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        26   7.0  
SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7)                    26   7.0  

>SB_49858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 927

 Score = 75.8 bits (178), Expect = 9e-15
 Identities = 38/73 (52%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +3

Query: 3   RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
           RNEIFAL PA +Q MWLGYPGTSGA YMDY++TD  TSP+        E   +  + F V
Sbjct: 630 RNEIFALRPAAIQAMWLGYPGTSGAPYMDYIITDKTTSPLEHADQYS-EKLAYMPNTFFV 688

Query: 183 AITSQWF-HLYKN 218
               Q F HL +N
Sbjct: 689 GDHKQMFPHLMQN 701


>SB_49086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 24  IPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVH 161
           I  PV ++WL  PG+S  S+   L+T A   P     P+ R  + H
Sbjct: 42  IGLPVFIIWLAKPGSSLFSWHPILMTFAGGGPGPLATPLIRALASH 87


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 18  ALIPAPVQVMWLGYPGTSGASYMDYLVT 101
           A++ +  +V WL  PGT+GAS+   + T
Sbjct: 251 AVVASLQKVRWLEAPGTAGASFSSRVQT 278


>SB_58153| Best HMM Match : RepA_C (HMM E-Value=7.7)
          Length = 426

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 163 PHTYFWWRSXANGSTFTKTADSERQKLNPPTIW 261
           P  + WWR+    +  T+TAD+  +  N P  W
Sbjct: 134 PTDWHWWRT---ANILTRTADAFNELRNSPFSW 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,734
Number of Sequences: 59808
Number of extensions: 242786
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)