Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0597
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc...    79   6e-16
U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac...    79   6e-16
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac...    79   6e-16
Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical pr...    29   0.66 
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p...    27   4.7  
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p...    27   4.7  
AF295927-1|AAL83724.1|  377|Caenorhabditis elegans paraoxonase-l...    26   8.1  
AF003141-2|AAK21482.2|  377|Caenorhabditis elegans Mechanosensor...    26   8.1  

>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
           transferase protein.
          Length = 1151

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +3

Query: 3   RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
           RNEIFAL PAP+QVMWLGYP TSGA++MDY++TDAVTSP+        E   +  H F +
Sbjct: 754 RNEIFALRPAPIQVMWLGYPSTSGATFMDYIITDAVTSPLRLANAF-TEKLAYMPHTFFI 812

Query: 183 AITSQ 197
              +Q
Sbjct: 813 GDHAQ 817


>U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac
           transferase protein1, isoform b protein.
          Length = 973

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +3

Query: 3   RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
           RNEIFAL PAP+QVMWLGYP TSGA++MDY++TDAVTSP+        E   +  H F +
Sbjct: 576 RNEIFALRPAPIQVMWLGYPSTSGATFMDYIITDAVTSPLRLANAF-TEKLAYMPHTFFI 634

Query: 183 AITSQ 197
              +Q
Sbjct: 635 GDHAQ 639


>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
           transferase protein1, isoform a protein.
          Length = 1151

 Score = 79.4 bits (187), Expect = 6e-16
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +3

Query: 3   RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
           RNEIFAL PAP+QVMWLGYP TSGA++MDY++TDAVTSP+        E   +  H F +
Sbjct: 754 RNEIFALRPAPIQVMWLGYPSTSGATFMDYIITDAVTSPLRLANAF-TEKLAYMPHTFFI 812

Query: 183 AITSQ 197
              +Q
Sbjct: 813 GDHAQ 817


>Z81133-3|CAB03443.3|  527|Caenorhabditis elegans Hypothetical
           protein T28B8.5 protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 24  IPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
           IP P    +   PGT+ +  + Y+ T  ++ P G+C    +  + H T  + V
Sbjct: 238 IPYPDVFGYFAPPGTASSLGVSYVQTTRLSKPYGSCTTKTKLKTTHYTGTYTV 290


>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
           protein R06F6.8a protein.
          Length = 1468

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 79  LAPLVPGYPSHITWTGAGIKAKISFR 2
           L  L  G+  H+TWTG  I A +SFR
Sbjct: 159 LVCLQNGFTHHVTWTGE-IIASLSFR 183


>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
           protein R06F6.8b protein.
          Length = 1470

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 79  LAPLVPGYPSHITWTGAGIKAKISFR 2
           L  L  G+  H+TWTG  I A +SFR
Sbjct: 159 LVCLQNGFTHHVTWTGE-IIASLSFR 183


>AF295927-1|AAL83724.1|  377|Caenorhabditis elegans paraoxonase-like
           protein MEC-6 protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 27  PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSV 158
           P P +V+   Y GT+G +Y++      +T   G    ++ +T +
Sbjct: 45  PGPCRVLTDNYKGTAGMTYVESQKRVYITLGYGRAHDLKTKTGI 88


>AF003141-2|AAK21482.2|  377|Caenorhabditis elegans Mechanosensory
           abnormality protein6 protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 27  PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSV 158
           P P +V+   Y GT+G +Y++      +T   G    ++ +T +
Sbjct: 45  PGPCRVLTDNYKGTAGMTYVESQKRVYITLGYGRAHDLKTKTGI 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,592,848
Number of Sequences: 27780
Number of extensions: 181559
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)