Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0597
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.44 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   0.44 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   0.44 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   0.77 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   1.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   1.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   4.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.4  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   5.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   5.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   5.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   5.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   5.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 ANGSTFTKTADSERQKLNPPTIWE 264
           +N + F K  +SE  KLNP   WE
Sbjct: 76  SNLNFFLKNDESESPKLNPYPNWE 99


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 200 PLAXDRHQKYVCGMYASFSLYGLASSHG 117
           PL+  +H   +CG  AS   YG+ S  G
Sbjct: 102 PLSGSKHLCSICGDRASGKHYGVYSCEG 129


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 200 PLAXDRHQKYVCGMYASFSLYGLASSHG 117
           PL+  +H   +CG  AS   YG+ S  G
Sbjct: 102 PLSGSKHLCSICGDRASGKHYGVYSCEG 129


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 101 SN*IVHVTSPASSRIPEPHYLDRGWYQSEN 12
           S+ IV   SP+SSR P P  L    +Q  N
Sbjct: 29  SSSIVDRRSPSSSRSPSPSLLTSQPHQDHN 58


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 294 GLIPAPLPXPFPNCWGI 244
           G++P P   PF   WGI
Sbjct: 202 GMLPDPKKTPFLISWGI 218


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 294 GLIPAPLPXPFPNCWGI 244
           G++P P   PF   WGI
Sbjct: 202 GMLPDPKKTPFLISWGI 218


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 257 IVGGFNFCRSESAVFVKVEPLAXDRHQKYVC 165
           ++GGF   +SE   F      +  R   YVC
Sbjct: 55  VIGGFEIEKSEDDSFNNQADKSEKRIPLYVC 85


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = +1

Query: 178 WWRSXANGSTFTKTADSERQKLNPPTIWEWXG 273
           WW      +  T  A   R+K+     W++ G
Sbjct: 45  WWSRPREPAQTTSKAGIHRKKVLLSVWWDYKG 76


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 288 IPAPLPXPFPNCWG 247
           IP P+P P P  +G
Sbjct: 111 IPVPVPVPVPVYYG 124


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 288 IPAPLPXPFPNCWG 247
           IP P+P P P  +G
Sbjct: 111 IPVPVPVPVPVYYG 124


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 288 IPAPLPXPFPNCWG 247
           IP P+P P P  +G
Sbjct: 111 IPVPVPIPVPVYYG 124


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 288 IPAPLPXPFPNCWG 247
           IP P+P P P  +G
Sbjct: 111 IPVPVPVPVPVYYG 124


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 288 IPAPLPXPFPNCWG 247
           IP P+P P P  +G
Sbjct: 344 IPVPVPVPVPVYYG 357


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -3

Query: 281 HHCPXHSQIVGGFNF 237
           HHCP   + + G  F
Sbjct: 474 HHCPEIYKAIEGIRF 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,836
Number of Sequences: 438
Number of extensions: 2306
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)