Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0597
(343 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 70 4e-13
At3g11540.2 68416.m01408 gibberellin signal transduction protein... 49 7e-07
At3g11540.1 68416.m01407 gibberellin signal transduction protein... 49 7e-07
At3g49850.1 68416.m05450 myb family transcription factor contain... 27 4.3
At5g49900.1 68418.m06179 expressed protein contains Pfam domain ... 26 5.7
At5g33380.1 68418.m03963 hypothetical protein 26 5.7
At5g17030.1 68418.m01996 UDP-glucoronosyl/UDP-glucosyl transfera... 26 7.6
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 26 7.6
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 26 7.6
>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
putative similar to O-GlcNAc transferase, Homo sapiens
[SP|O15294], Rattus norvegicus [SP|P56558]; contains
Pfam profile PF00515: TPR Domain; identical to cDNA
GI:18139886
Length = 977
Score = 70.1 bits (164), Expect = 4e-13
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = +3
Query: 3 RNEIFALIPAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFLV 182
RNEIFA+ PAP+QV ++G+PGT+GA+Y+DYLVTD SP+ I E VH H + V
Sbjct: 682 RNEIFAMQPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAH-IYSEKLVHLPHCYFV 740
>At3g11540.2 68416.m01408 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 732
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 27 PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFL 179
PAPVQV W+GYP T+G +DY +TD++ P T Q Q E V FL
Sbjct: 402 PAPVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQK-QVEELVRLPDCFL 451
>At3g11540.1 68416.m01407 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 914
Score = 49.2 bits (112), Expect = 7e-07
Identities = 24/51 (47%), Positives = 30/51 (58%)
Frame = +3
Query: 27 PAPVQVMWLGYPGTSGASYMDYLVTDAVTSPVGTCQPIQRETSVHATHVFL 179
PAPVQV W+GYP T+G +DY +TD++ P T Q Q E V FL
Sbjct: 584 PAPVQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQK-QVEELVRLPDCFL 633
>At3g49850.1 68416.m05450 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 295
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 102 DAVTSPVGTCQPIQRETSVHATHVFLVAITS 194
DA + P G+C+P + TSV + L AITS
Sbjct: 105 DAPSPPAGSCEPPRPSTSV--DKIILEAITS 133
>At5g49900.1 68418.m06179 expressed protein contains Pfam domain
PF04685: Protein of unknown function, DUF608
Length = 957
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/56 (23%), Positives = 22/56 (39%)
Frame = +1
Query: 121 WELASPYSEKLAYMPHTYFWWRSXANGSTFTKTADSERQKLNPPTIWEWXGQWCWD 288
W+L P E + + + + S ANG ++ KL+ G W W+
Sbjct: 115 WQLFPPKCEDEPVLANQFSAFVSRANGKKYSSVLCPRNPKLDKQDSESGIGSWDWN 170
>At5g33380.1 68418.m03963 hypothetical protein
Length = 154
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 184 RSXANGSTFTKTADSERQKLNPPTIWEWXGQWCWD*PEP 300
R +GS +R+K +PPTI E G D PEP
Sbjct: 14 RGDIDGSQSDTKPLLQRRKSHPPTIGEAGGSSWQDAPEP 52
>At5g17030.1 68418.m01996 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP glucose:flavonoid
3-o-glucosyltransferase from Vitis vinifera,
EMBL:AF000372
Length = 459
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 30 APVQVMWLGYPGTSGASYMDYLVTDAVTSPVG 125
A ++ W+ Y G S +L TDA+ VG
Sbjct: 131 AEMKASWVAYYGGGATSLTAHLYTDAIRENVG 162
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 74 PASSRIPEPHYLDRGWYQSEN 12
P SS++ PH LDRG +SEN
Sbjct: 861 PDSSKLQSPHILDRG--RSEN 879
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 195 QWFHLYKNR*F*TTKVKSPNNLGMARAMVLGL-TRTXWGPLXENWPXKKK 341
QW+ L+ ++ TK+K P +L +++GL T P+ E + +KK
Sbjct: 315 QWYQLHSSKALDQTKLKEPASL-FEHFIIVGLHPETNLRPVEEAFRRRKK 363
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,234,663
Number of Sequences: 28952
Number of extensions: 175305
Number of successful extensions: 381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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