Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0596
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.6  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    22   3.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.9  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   7.9  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 270 PNTAVRHSLTLAIFRSVTFSDDSARF 193
           PN  +RH   L  F +    D+ ARF
Sbjct: 409 PNYEIRHKFKLWNFNNQISDDNPARF 434


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 465 VPFSARSLNESLVEAXRSKL 406
           VPF ARSL E +V     KL
Sbjct: 61  VPFIARSLGEDIVTYSGHKL 80


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 475 RGRTENLFXEFSYGQKPETGLGKRRKAVDLRDGXVRRCVA 594
           R  T+N   +  YG   E  +  RRK  + R   +++C++
Sbjct: 214 RSITKNAVYQCKYGNNCEIDMYMRRKCQECR---LKKCLS 250


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -3

Query: 550 FAVFQDQFPVFVHMKTL*IDFQFVREC 470
           FA F   FP+ ++++   +++ F ++C
Sbjct: 29  FAHFICLFPITINIRKNGLNYNFTKKC 55


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 56  LKILLEELKARAGPFAAVGKLTADKHATRRLIANV 160
           L I+  E ++   PF  +   T +  AT R IAN+
Sbjct: 52  LTIVFFEKRSALSPFELIQIRTINFVATFRTIANI 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,051
Number of Sequences: 336
Number of extensions: 1875
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)