Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0596
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.52 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.8  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    27   2.8  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    25   6.4  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   6.4  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    25   8.5  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 202  RAFQLIFLCYNAFIDVGNQSPRGVLV 125
            +A + + LC+NAF+DV N  P  V V
Sbjct: 1645 KASEFVILCFNAFLDVSNIFPAIVRV 1670


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 530  VSGFCPYENSXNRFSVRPRMSG 465
            ++GFCP+EN       R R+SG
Sbjct: 1028 INGFCPFENGRRLPKYRIRLSG 1049


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
 Frame = +2

Query: 2   EYLVRECERTRTQTRVESLKILL--EELKA----RAGPFAAVGKLTADKHATRRLIANVD 163
           EYL+ E    +    VES K+L   EE+K     +   F  V  LT ++   ++ + N  
Sbjct: 448 EYLMEELNELKNNLEVESSKVLRLDEEMKCLKDEQLSQFDTVFSLTDERDGLQKDLKNTK 507

Query: 164 KSI---ITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQ 280
            ++   I +   LK  +    +T  K+ +  E L+     LQ
Sbjct: 508 GNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQ 549


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 25/97 (25%), Positives = 42/97 (43%)
 Frame = +2

Query: 305 DRYKAHISLPQESIEQLQKFYDEKRSSRKMKLQLSFDLXASTSDSFNDRAENGTPTFADE 484
           D Y    S P  +++Q +   +E  SS +   +   D+   + +S  D  E G    ADE
Sbjct: 299 DFYDFTTSYPDYAVKQDETVVEEDGSSGEGDWE---DVSDDSDNSSLDSLEMGRVPIADE 355

Query: 485 LKIYLXSFHMDKNRKLVLENGEKLWIFETVXXVGASL 595
            +++L S +   +R L     + L    T    GAS+
Sbjct: 356 YELHLPSGNRVGHRSLSRYFRQNLHSSSTAVGDGASI 392


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +2

Query: 38  QTRVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALSSLN 217
           +T +++++  +E L    G  AA    T     TR++ A V ++    K+EL +  S   
Sbjct: 510 RTLIDAIQPFVETLNEGKGLDAAAKAATEGSEQTRKMDAVVGRASYVAKEELHKLDSEGG 569

Query: 218 VTD 226
           + D
Sbjct: 570 LPD 572


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 431 SDSFNDRAENGTP----TFADELKIYLXSFHMDKNRKLVLENGEKLWIFE 568
           + SFND  E+  P    T   +  IY+ S+ + K+  L++ + E    FE
Sbjct: 315 TQSFNDSMEHWVPVCFPTLNPDAYIYIYSYFLCKDTVLIMGSSESGVFFE 364


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +2

Query: 365 YDEKRSSRKMKLQLSFDLXASTSDSFNDRAE--NGTPTFADELKIYLXSFHMDKNRKLVL 538
           Y EKR+S + K+Q  F L  S   +++  A   N   +F+ +         +   +K++ 
Sbjct: 147 YAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKELIDGQKILF 206

Query: 539 ENGEKLW 559
           EN E L+
Sbjct: 207 ENEEALY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,040,817
Number of Sequences: 5004
Number of extensions: 35204
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)