Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0596
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0648 + 25873779-25874279,25874418-25875548 33 0.17
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 31 0.93
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 31 0.93
11_06_0660 - 26005210-26006150,26006440-26006467,26007307-260078... 30 1.2
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 30 1.6
12_02_0911 + 24236374-24237582 28 6.6
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 28 6.6
08_02_0553 - 18561912-18563042 28 6.6
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 28 6.6
02_05_0372 + 28370589-28371857 28 6.6
02_04_0001 - 18816492-18816741,18816881-18817050,18817244-188173... 28 6.6
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066... 28 6.6
11_06_0682 - 26253319-26253575,26254009-26254114 27 8.7
08_01_0690 - 6106689-6106988,6107278-6107391,6107528-6107596,610... 27 8.7
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = -1
Query: 273 QPNTAVRHSLTLAIFRSVTFSDDSARFNSSFFVIMLLSTLAISRRVACLSAVSLPTAAKG 94
Q +AV + L +A ++ F D +R +S ++ ++S L I+RR+ + + LPT G
Sbjct: 92 QDKSAV-YQLVMARRQADRFRDVQSRIDSYLLLVPVISLLDITRRLDRIYNILLPTNTPG 150
Query: 93 PAR-AFS 76
P+ AFS
Sbjct: 151 PSMPAFS 157
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 30.7 bits (66), Expect = 0.93
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +2
Query: 20 CERTRTQTRVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKR 199
CE RT+ ++E K +LE+ + + + K+ A +++ L + S TK+D +
Sbjct: 126 CEECRTEMQIEKEKSILEKSQVKVSTISVGSKVKAANVSSKDLNVSNISSKSTKEDAEEG 185
Query: 200 ALSSLNVTDRKIANVRECL--TAVFGCLQRRGCSGRMDRYKAHI 325
+ S + K + R C+ + + + SGR D + I
Sbjct: 186 IVPSGCTSTGKEEDGRSCIGGSEAANKNEEQTSSGRNDDFNLKI 229
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 273 QPNTAVRHSLTLAIFRSVTFSDDSARFNSSFFVIMLLSTLAI 148
QP++ + HSL + FRSV+FS S +S F S ++I
Sbjct: 276 QPDSILAHSLNESSFRSVSFSKSSVMDHSMHFSSAQFSDISI 317
>11_06_0660 -
26005210-26006150,26006440-26006467,26007307-26007838,
26008863-26009008
Length = 548
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -1
Query: 273 QPNTAVRHSLTLAIFRSVTFSDDSARFNSSFFVIMLLSTLAISRRVACLSAVSLPTAAKG 94
Q +AV + L +A ++ F D +R +S V +S + I+RR+ + + LPT G
Sbjct: 151 QDKSAV-YRLVMAGRQAERFRDVQSRIDSYLLVFPFISHIDITRRLDRIYNILLPTNTPG 209
Query: 93 PA 88
P+
Sbjct: 210 PS 211
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/81 (32%), Positives = 36/81 (44%)
Frame = +2
Query: 47 VESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVTD 226
VE K+ L + K R P LT+D RR++ + K K EL + L L +
Sbjct: 432 VEQEKLALGQRKRRRCP-----PLTSDDRRHRRILHMLKKKKFVLKVELHKWLEGLEKEN 486
Query: 227 RKIANVRECLTAVFGCLQRRG 289
KI + R+ LT LQ G
Sbjct: 487 GKIMD-RKTLTRTLNKLQEEG 506
>12_02_0911 + 24236374-24237582
Length = 402
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 224 DRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQLQKF 364
+RKI+ LT V CL+ R +G + H++ +E+ + QKF
Sbjct: 298 ERKISASLYALTGVSECLRIRAAAGATAAARDHLTGLREACRKKQKF 344
>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +2
Query: 338 ESIEQLQKFYDEKRSSRKMKLQLSFDLXASTSDSFNDRAENGTPT 472
E I+Q+ + +DE ++R+ + + ++ +T+ FN + + PT
Sbjct: 1049 EKIDQILEKFDEIEANRRKSFEETTNIIKATTSIFNSASSSTPPT 1093
>08_02_0553 - 18561912-18563042
Length = 376
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 165 LSTLAISRRVACLSAVSLPTAAKGPAR-AFSSSSRIFKDSTRVCVRVL 25
L L + R+ + LPT A GPAR + + R+ STR CV V+
Sbjct: 277 LLQLVSNERLRSVEHRVLPTGAAGPARVSVACFFRLAYSSTRPCVPVV 324
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 380 SSRKMKLQLSFDLXASTSDSFN-DRAENGTPTFADELKI 493
+ +K++L+ F L ++ +F + +N T +FAD LKI
Sbjct: 417 ADKKLRLEKLFVLQGNSYSTFTWEEIDNATSSFADNLKI 455
>02_05_0372 + 28370589-28371857
Length = 422
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = +2
Query: 41 TRVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANV--DKSIITKKDELKRALSSL 214
T+++S++ + A G F A G + + +A D S +E L++L
Sbjct: 124 TKLKSMRARMAGDVAMQGEFVASGGVRVVGRVMAQALAESGGDFSAFAACEEAAAVLAAL 183
Query: 215 NVTDR---KIANVRECLTAVFGCLQRRGCSGRM 304
++D ++ EC+ V LQR G R+
Sbjct: 184 PLSDEASVRVVLAPECIRPVMALLQRGGAEARL 216
>02_04_0001 -
18816492-18816741,18816881-18817050,18817244-18817388,
18817495-18817565,18817910-18817993,18818103-18818222,
18818310-18818480,18818955-18819044,18821893-18821985,
18822073-18822405
Length = 508
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 282 LCRQPNTAVRHSLTLAIFRSVTFSDDSARFNSSFFVIMLLSTLAISRRVACLS 124
+ QP +A+R L L +F S +DDS R S L+ C+S
Sbjct: 312 MSEQPTSAIRGELLLELFSSYDTTDDSERNTLSLRSFSLILIHDSDMHSCCIS 364
>02_02_0693 +
13006243-13006245,13006439-13006501,13006608-13006687,
13007964-13008072,13009027-13009074,13011044-13011203,
13011295-13011458,13011549-13011902
Length = 326
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +2
Query: 179 KKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQLQ 358
++D+L + L + + +E V LQR S D Y + +L Q +
Sbjct: 155 ERDKLADPMYKLEHQEEDLKKKKEA-EPVLVRLQRLSDSRHSDDYALNRALRDRLRSQKK 213
Query: 359 KFYDEKRSSRKMKL 400
+ +EKRS+RKM L
Sbjct: 214 RVAEEKRSARKMGL 227
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 487 ENLFXEFSYGQKPETGLGKRRKAVDLR 567
E L+ + G +PETGL K RKA R
Sbjct: 3 EKLWDDVVAGPRPETGLEKLRKAATTR 29
>08_01_0690 -
6106689-6106988,6107278-6107391,6107528-6107596,
6107754-6107858,6108412-6108522,6108957-6109199
Length = 313
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 110 GKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVR 247
G+ + + +R+ D+ K D+L R L L V R IAN++
Sbjct: 66 GRSRSARLGLQRVSLEEDQGSSDKSDDLVRVLRELTVVQRNIANLQ 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,356
Number of Sequences: 37544
Number of extensions: 232645
Number of successful extensions: 842
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -