Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0596
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37715| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_10312| Best HMM Match : MpPF2 (HMM E-Value=0.26) 31 0.94
SB_6152| Best HMM Match : rve (HMM E-Value=0.0036) 31 0.94
SB_3400| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82) 29 2.2
SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011) 29 2.2
SB_43194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 2.9
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 29 2.9
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019) 28 5.0
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 6.6
SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_37715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 30.7 bits (66), Expect = 0.94
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +2
Query: 194 KRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQLQKFYDE 373
+ A+ L V++ + +E L FG QRR +D+ + I L I+ +KF D
Sbjct: 13 REAIQGLGVSEPEYEEAKEILRTKFGG-QRRQIQAYIDQLEGFIPLENSDIQGFEKFADL 71
Query: 374 KRSSRKMKLQ 403
R + +KLQ
Sbjct: 72 VRVT-VVKLQ 80
>SB_10312| Best HMM Match : MpPF2 (HMM E-Value=0.26)
Length = 522
Score = 30.7 bits (66), Expect = 0.94
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 17 ECERTRTQTRVESLKILLEEL-KARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDEL 193
E ER TR ESL+ L EEL + R A + TA + L V++ + ++DEL
Sbjct: 53 EAERAENSTREESLQQLKEELEEVRMKGDADEAEKTALEEIVLNLKTEVEE-VKCERDEL 111
Query: 194 KRALSSL 214
K +S L
Sbjct: 112 KERVSGL 118
>SB_6152| Best HMM Match : rve (HMM E-Value=0.0036)
Length = 555
Score = 30.7 bits (66), Expect = 0.94
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 200 ALSSLNVTDRKIANV-RECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQLQKFYDEK 376
A +L T+R A + +ECL VF C S +R+ + P+ + +LQKF +
Sbjct: 22 ASRTLTPTERGYAQIGKECLAIVFACESSTSTSMEENRFSS--KAPKGMLLRLQKFNLDV 79
Query: 377 RSSRKMKLQLS 409
R + +++ L+
Sbjct: 80 RYKKGVEMYLA 90
>SB_3400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +2
Query: 23 ERTRTQTRVESLKILLEELKARAGPFAAVGKLTADK----HATRRLIANVDKSIITKKDE 190
E T Q R S +I E + R F TA++ +AT + KS+IT+ DE
Sbjct: 174 EVTCDQKRSNSPEIKTENFRNRHDEFFGKRSETAEERARIYATTVESFSSQKSVITRVDE 233
Query: 191 LKRALSSLNVTDRKIA 238
+ + S++ TD++++
Sbjct: 234 MHSSSGSVSCTDKRVS 249
>SB_18229| Best HMM Match : RVT_1 (HMM E-Value=0.82)
Length = 458
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +2
Query: 44 RVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVT 223
R + +K+ E+LK R + + + D +L + T K ++KR L N
Sbjct: 170 RRKGIKLNKEKLKLRCQVYGSRDGMKPDPD---KLQGIEELPTPTNKQDIKRLLGMANYL 226
Query: 224 DRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQ--LQKFYDE 373
N+ E A+ ++R RYK S ++ + Q + KF+D+
Sbjct: 227 QNFAPNLSEAAAAMREVSRKRTSPTETSRYKDKASKVKKIVSQAPVLKFFDQ 278
>SB_58058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.5 bits (63), Expect = 2.2
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Frame = +2
Query: 44 RVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVT 223
R + +K+ E+LK R + + + D +L + T K ++KR L N
Sbjct: 85 RRKGIKLNKEKLKLRCQVYGSRDGMKPDPD---KLQGIEELPTPTNKQDIKRLLGMANYL 141
Query: 224 DRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQ--LQKFYDE 373
N+ E A+ ++R RYK S ++ + Q + KF+D+
Sbjct: 142 QNFAPNLSEAAAAMREVSRKRTSPTETSRYKDKASKVKKIVSQAPVLKFFDQ 193
>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
Length = 782
Score = 29.5 bits (63), Expect = 2.2
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +2
Query: 125 DKHATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGRM 304
D RR++ N DK+I E S+ VT +K+ R+ T + C S M
Sbjct: 603 DPKGERRILLNGDKTIAVVPKEQCDDYLSVEVTSKKVGPRRDASTVYYPC-----SSATM 657
Query: 305 DRYKAHISLPQESIEQLQK--FYDEKRSSRKMKLQLS 409
D I Q I L + F EK + R ++L+ S
Sbjct: 658 DSCFVLIRTRQHGIAGLPQLNFIGEKTAGR-LRLERS 693
>SB_43194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 41 TRVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKK 184
TRV L+ L EL P V T+D+H +++ D +I+ K
Sbjct: 4 TRVGPLQSLSAELPTSTSPQPEVSTSTSDRHTKYTILSESDDTIVKPK 51
>SB_37238| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1003
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 164 KSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQES 343
+S++ K+ E A+ V++ + +E L FG QRR MD+ + + L
Sbjct: 95 ESLVDKEVEPIDAIQG-RVSEPEYEEAKEILRTKFGG-QRRHIQAYMDQLEGFVPLENSD 152
Query: 344 IEQLQKFYDE 373
I+ +KF D+
Sbjct: 153 IQGFEKFADQ 162
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 173 ITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQ--RRGCSGRMDRYKAHISLPQESI 346
+T+ + L+RAL+ L ++ + + G + RRG GR+ + + L +E+I
Sbjct: 1458 VTRANNLQRALAELEEERTRMDQRMQSIQKSLGESEEERRGADGRLSSAQTALMLQEETI 1517
Query: 347 EQLQK 361
+L++
Sbjct: 1518 RRLER 1522
>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
Length = 1136
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +2
Query: 107 VGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRR 286
+ +L ADK + ++ DK++ + E + LS LN +R + +E L G +
Sbjct: 932 MNQLEADKRSLMDRVSCADKTMTSTAREKEALLSYLNTVERVLEQSKEQLRLSHGAV--- 988
Query: 287 GCSGRMDRYKAHISLPQESI 346
G +D + LP E +
Sbjct: 989 ---GALDLALPQLMLPDERL 1005
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -1
Query: 165 LSTLAISRRVACLSAVSLPTAAKG--PARA----FSSSSRIFKDSTRVCV 34
LST + +R+ACL V + A+KG P ++ F I +D T VC+
Sbjct: 1773 LSTCML-KRLACLKGVHIAIASKGRCPCKSATCQFGGRCEIQEDGTEVCI 1821
>SB_8348| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/78 (24%), Positives = 34/78 (43%)
Frame = +2
Query: 155 NVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLP 334
++ K ITK K+ + + VTD + R+ + +G D K +LP
Sbjct: 116 SLHKKHITKSWSRKKIVDTFGVTDHMVWRSRQLR-------REKGILADPDPKKGGRALP 168
Query: 335 QESIEQLQKFYDEKRSSR 388
+ +E + KFY+ + R
Sbjct: 169 SDVLEHIVKFYESEEYPR 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,018
Number of Sequences: 59808
Number of extensions: 262060
Number of successful extensions: 1043
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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