Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0596
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.15 
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    23   5.7  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    23   7.5  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
 Frame = +2

Query: 38   QTRVESLKILLEEL-KARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALSSL 214
            Q  V+SL   +  L +     F +   L   K+    L+ N   ++  +KDEL +AL  +
Sbjct: 794  QHEVDSLNDEIRRLNQENKEAFTSRMSLEVTKNKLENLLTN---NLFRRKDELVQALQEI 850

Query: 215  NVTDRK--IANVRECLTAVFGCLQR-RGCSGRMDRYKAHISLPQESIEQLQKFYDEKRSS 385
            +V DRK  + N R  + A    +++    +  +DR  +     Q+++++  + + +K   
Sbjct: 851  SVEDRKRQLTNCRNEVVATEKRIKKVLTDTEEVDRKLSEALKQQKTLQKELESWIQKEKE 910

Query: 386  RKMKLQ 403
             + KL+
Sbjct: 911  AQEKLE 916


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 50  ESLKILLEELKARAGPFAAVGK 115
           +SL  LL+ L    GPF  VGK
Sbjct: 337 QSLPGLLKRLAGCVGPFVGVGK 358


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 134 ATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVRECL 256
           A RRL+A V +SII     +    + L    RK+A V+  L
Sbjct: 781 AKRRLLAAVAESIIRYAAPVWSEATDLQWCQRKLAQVQRPL 821


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,116
Number of Sequences: 2352
Number of extensions: 8856
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)