Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0596
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical ... 32 0.27
U20862-5|AAK29861.1| 483|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41994-12|AAK31522.1| 118|Caenorhabditis elegans Hypothetical p... 29 1.9
AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical ... 29 2.5
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z78416-3|CAB01680.2| 631|Caenorhabditis elegans Hypothetical pr... 28 4.4
AL132847-4|CAB63373.3| 965|Caenorhabditis elegans Hypothetical ... 28 4.4
AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical ... 28 4.4
AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 28 4.4
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 28 5.9
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 27 7.7
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 7.7
AF022971-2|AAG23980.1| 327|Caenorhabditis elegans Seven tm rece... 27 7.7
>AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical
protein Y39H10B.2 protein.
Length = 232
Score = 32.3 bits (70), Expect = 0.27
Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 4/150 (2%)
Frame = +2
Query: 29 TRTQTRVESLKILLEELKARAGPFAAVGKLTADKHATRRLIANVDKSIITKKDELKRALS 208
T Q+R +S + ++ ++K + F + + D RR A + +++
Sbjct: 71 TMEQSRQQS-EAMISQMKTQTEEFQRIVQELKDDADERRNRAQTSLDNSEYETLVQQRQK 129
Query: 209 SLNVTDRKIANVRECLTAVFGCLQRRGCSGRMDRYKAHISLPQESIEQLQKFYDE---KR 379
+ +++ +E L + LQR+ C +++ A QE+ E++QK DE K
Sbjct: 130 LIENSEKSQQETKEQLEKIVE-LQRKSCDQNKEKFTALELQLQETNERMQKQLDELNAKF 188
Query: 380 SSRKMKLQLSFDLXAST-SDSFNDRAENGT 466
KLQ + D A T ++ ++NGT
Sbjct: 189 EDVNRKLQKASDCNADTEKENEEGVSDNGT 218
>U20862-5|AAK29861.1| 483|Caenorhabditis elegans Hypothetical
protein W06E11.1 protein.
Length = 483
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 71 EELKARAGPFAAVGKLTADK--HATRRLIANVDKSIITKKDELKRALS-SLNVTDRKIAN 241
EEL +G + K D +L A++ KS + K E++R + S TD+ IA
Sbjct: 283 EELVIESGKEHMLSKQRIDDLPDPNLQLKAHMVKSHVMKTSEMRRLIDPSAMSTDKMIAK 342
Query: 242 VRECLTAVFG 271
++EC + V G
Sbjct: 343 LKECASLVQG 352
>U41994-12|AAK31522.1| 118|Caenorhabditis elegans Hypothetical
protein F59A6.2 protein.
Length = 118
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 230 KIANVRECLTAVFGCLQRRG--CSGRMDRYKAHISLPQESIEQLQKFYDEKRSSRKMKLQ 403
++ + ++ L A+ G LQRR + A + ++ E++QK D+KR RK+ Q
Sbjct: 27 RLMHTKKGLLAIRGELQRRAEIWGAAQEEITALEKMASDAKERIQKQSDQKREERKLAAQ 86
Query: 404 LSFDLXASTSDSFNDRAENGTPTFADE 484
+L + + +++ DE
Sbjct: 87 KRKELKQKQKEEKKEESKDEKDGADDE 113
>AF003150-4|AAB54217.1| 381|Caenorhabditis elegans Hypothetical
protein T05E7.5 protein.
Length = 381
Score = 29.1 bits (62), Expect = 2.5
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +2
Query: 125 DKHATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGRM 304
D TRR +AN I K E K S LN I N+ + + + G Q+ +
Sbjct: 95 DHQKTRRELANSRLEISDLKGEAKCHDSELNRLYTIINNLEKKVEDLNGEHQKS-----L 149
Query: 305 DRYKAHISLPQESIEQLQKFYDEKR-SSRKMKL 400
++ K + IE ++FYDEK+ + KM L
Sbjct: 150 EKLKERLHEKDAFIEACEEFYDEKKINVNKMTL 182
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -1
Query: 219 TFSDDSARFNSSFFVIMLLSTLAISRRVACLSAVSLPTAAKGPARAFSSSSRIFKDSTRV 40
TF ++ N I LST I R+ C + A K F + +F+D TR+
Sbjct: 33 TFLEEQLENNLDSLSIHELSTNLIRNRICCREFIESRPAKKWVFLIFRLARTLFRDKTRI 92
>Z78416-3|CAB01680.2| 631|Caenorhabditis elegans Hypothetical
protein C23H4.3 protein.
Length = 631
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 184 FLCYNAFIDVG-NQSPRGVLVCGQFADGREGSRPRLQLFEQDFQRFDSCLRSSPF 23
F CYN D N + +L C + DGRE + + E D + F S LR +PF
Sbjct: 275 FGCYNGTKDDRPNANIAEMLDCMRQIDGREMLLMQRHMEEVDDRDFRSVLRGAPF 329
>AL132847-4|CAB63373.3| 965|Caenorhabditis elegans Hypothetical
protein Y48G10A.4 protein.
Length = 965
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 128 KHATRRLIANVDKSIITK--KDELKRALSSLNVTDRKIANVRECLTAVFGCL 277
K R + DK + + KD+ K A+ L + +RK A++R C A F L
Sbjct: 33 KQLPRLCMQFTDKGFLAEREKDKGKLAVEELMLFERKAASMRLCAMATFAAL 84
>AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical
protein Y73E7A.1b protein.
Length = 146
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 314 KAHISLPQESIEQLQKFYDEKRSSRKMKLQLSFDL 418
+AHI + +E E++ + +EKR K++++ DL
Sbjct: 19 RAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDL 53
>AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical
protein Y73E7A.1a protein.
Length = 223
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 314 KAHISLPQESIEQLQKFYDEKRSSRKMKLQLSFDL 418
+AHI + +E E++ + +EKR K++++ DL
Sbjct: 96 RAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDL 130
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 27.9 bits (59), Expect = 5.9
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Frame = +2
Query: 119 TADKHATRRLIANVDKSI-------ITKKDELKRALSSLNVTDRKIANVRECLTAVFGCL 277
++DK++TR KS+ + DEL +++ SL T I R VF
Sbjct: 218 SSDKYSTRHFDLGSKKSLEKSVRAMMANVDELNKSIQSL--TKYTIDKQRHD-NMVFSLT 274
Query: 278 QRRGCSGRMDRYKAHISLPQESIEQLQKFYDEKRSSRKMKLQLSFDLXASTSDSFNDRAE 457
Q+R + ++P + I++++ + R+ +L SFD A S +E
Sbjct: 275 QKRQQENESRVARGDPTIPMDDIKRIKAPQLQTRNGLLDELLASFDTNALADFSKTVTSE 334
Query: 458 NGTPTFADE 484
N T F E
Sbjct: 335 NITKMFIAE 343
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 209 SLNVTDRKIA-NVRECLTAVFGCLQRRGCSGRMDRYK 316
+++++D+K NV EC + GC Q+ C ++ YK
Sbjct: 3255 AIDISDQKSCHNVNECYEGISGCSQK--CDDKIGSYK 3289
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +2
Query: 320 HISLPQESIEQLQKFYDEKRSSRKMKLQLSFDLXASTSDSFNDRAE 457
H+ + QE EQ+ +++ K+K++ +L S++F + E
Sbjct: 452 HVLMVQEMTEQIASMHEKNDEMEKLKVEQMKELEKWKSEAFTSKQE 497
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 209 SLNVTDRKIA-NVRECLTAVFGCLQRRGCSGRMDRYK 316
+++++D+K NV EC + GC Q+ C ++ YK
Sbjct: 3255 AIDISDQKSCHNVNECYEGISGCSQK--CDDKIGSYK 3289
>AF022971-2|AAG23980.1| 327|Caenorhabditis elegans Seven tm
receptor protein 46 protein.
Length = 327
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 213 SDDSARFNSSFFVIMLLSTLAISRRVACLSAVSLPTAAKGPARAFSSSSR 64
SDDS R+ + F+I S L + + + A+ + +A + R FS +R
Sbjct: 187 SDDSLRWRNLSFIICGGSLLTVQYVIIIICAIKMHSAMERELRKFSVRNR 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,389,004
Number of Sequences: 27780
Number of extensions: 198633
Number of successful extensions: 674
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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