Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0596
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.75 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.75 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.0  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 179 KKDELKRALSSLNVTDRKIANVRECLTAVFG 271
           +K  L   LSS N  +R +AN  E L   FG
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 179 KKDELKRALSSLNVTDRKIANVRECLTAVFG 271
           +K  L   LSS N  +R +AN  E L   FG
Sbjct: 55  EKRLLNELLSSYNTLERPVANESEPLEVKFG 85


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 335 QESIEQLQKFYDEKRSSRKMKL 400
           +ES+  L  FYD  + S ++ L
Sbjct: 70  EESVSALSSFYDRTKMSLQLVL 91


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 335 QESIEQLQKFYDEKRSSRKMKL 400
           +ES+  L  FYD  + S ++ L
Sbjct: 85  EESVSALSSFYDRTKMSLQLVL 106


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -2

Query: 317 PCTCPCGRCSLVS 279
           PC C C +C + +
Sbjct: 1   PCYCTCEKCKITA 13


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 488 KIYLXSFHMDKNRKLVLENGEK 553
           KIY+  F  DKN +  +  G+K
Sbjct: 759 KIYIILFQPDKNIRRKVTMGDK 780


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 488 KIYLXSFHMDKNRKLVLENGEK 553
           KIY+  F  DKN +  +  G+K
Sbjct: 849 KIYIILFQPDKNIRRKVTMGDK 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,116
Number of Sequences: 438
Number of extensions: 2352
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)