Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0596
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    30   1.0  
At3g18240.2 68416.m02321 expressed protein                             29   2.4  
At3g18240.1 68416.m02320 expressed protein                             29   2.4  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    28   5.4  
At2g28590.1 68415.m03474 protein kinase family protein contains ...    27   7.2  
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ...    27   7.2  
At4g31570.1 68417.m04483 expressed protein                             27   9.5  
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ...    27   9.5  

>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +2

Query: 29  TRTQTRVESLKILLEELKARAGPFAAVGKLTADKHATR--RLIANVDKSIITKKDELKRA 202
           TR  T V   +  +++L + +  ++A+ KLT++  A     LI+  ++ I    + L RA
Sbjct: 346 TRITTLVAEKESYIQKLDSISKDYSAL-KLTSETQAAADAELISRKEQEIQQLNENLDRA 404

Query: 203 LSSLNVTDRKIANVRE 250
           L  +N +  K+A++ E
Sbjct: 405 LDDVNKSKDKVADLTE 420


>At3g18240.2 68416.m02321 expressed protein
          Length = 419

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 107 VGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRR 286
           V +L   KH  +RL   V K   + KDEL   ++S     R+  N ++CL  ++G ++  
Sbjct: 319 VKELGLSKHQAKRLRELVGKRYHSGKDEL--TITSERFEHRE-ENRKDCLRTLYGLIEEA 375

Query: 287 GCSGRM 304
           G + ++
Sbjct: 376 GKANKI 381


>At3g18240.1 68416.m02320 expressed protein
          Length = 419

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 107 VGKLTADKHATRRLIANVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRR 286
           V +L   KH  +RL   V K   + KDEL   ++S     R+  N ++CL  ++G ++  
Sbjct: 319 VKELGLSKHQAKRLRELVGKRYHSGKDEL--TITSERFEHRE-ENRKDCLRTLYGLIEEA 375

Query: 287 GCSGRM 304
           G + ++
Sbjct: 376 GKANKI 381


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +2

Query: 17   ECERTRTQTRVESLKILLEELKARAGPF----AAVGKLTADKHATRRLIANVDKSIITKK 184
            E E+     + +SL   LEE K  AG      A V +   ++    + I  +DK +   K
Sbjct: 1472 EKEKDELSKQNQSLAKQLEEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLK 1531

Query: 185  DELKRALSSLNVTDRKIANVR 247
            DE+++    L   D ++   R
Sbjct: 1532 DEVRKKTEDLKKKDEELTKER 1552


>At2g28590.1 68415.m03474 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 424

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 146 LIANVDKSIITKKDELKRALSSLNVTDRKIANVRECLT 259
           +  +V K I+TKKD+L       NV D  I    +  T
Sbjct: 50  ICGDVSKEIVTKKDQLALDAKDTNVEDEVIVKKAQTFT 87


>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 545

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 240 LAIFRSVTFSDDSARFNSSFFVIMLLSTLAISRRVACLSAVSL 112
           L + RSVT S +    + S F I L STL +SR    L  + L
Sbjct: 31  LRLSRSVTTSFNILNIHLSHFAIRLSSTLVMSRHFLFLGIIIL 73


>At4g31570.1 68417.m04483 expressed protein
          Length = 2712

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
 Frame = +2

Query: 149  IANVDKSIITKKDELKRALSSLNVTDRKIANVRECLTAVFGCLQRRGCSGR---MD---R 310
            ++ +++ ++  +DE +RA+   +     ++   E +  +  CL R G SG    +D   R
Sbjct: 1050 LSTMEEQLVALQDESERAMMVEHELTSLMSEFGEAVVRLDDCLLRSGTSGAHTGLDMTKR 1109

Query: 311  YKAHISLPQESIEQLQKFYDEKRSSRKMKLQLSFDLXASTSDSFNDRAENGTPTFADELK 490
                + +    IE L+    EK  +  +K + + +       SFN   E    T +   K
Sbjct: 1110 ISGSVDVAVNVIEDLK----EKLEAAYVKHESTSNKYEELKQSFNTLFEKNEFTASSMQK 1165

Query: 491  IY 496
            +Y
Sbjct: 1166 VY 1167


>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1016

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 401 QLSFDLXASTSDSFNDRAENGTPTFADELKI 493
           Q  FD+ ++ SDS +D +EN      D LK+
Sbjct: 405 QYGFDVNSTVSDSESDSSENYVSHIKDSLKL 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,749,362
Number of Sequences: 28952
Number of extensions: 184201
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)