Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0595
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    26   0.37 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.85 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.85 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.85 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   3.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.6  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 167 EIFLCNVPLLTIIKI 123
           E+FLCN+ LLT+I I
Sbjct: 277 EMFLCNMSLLTVIPI 291


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 667 IISLGTSSQYSSLXIFQSFCKYGLKWF 587
           ++  G S  Y    IF+S CK  + WF
Sbjct: 109 VVKHGGSCLYVPPGIFKSTCKMDITWF 135


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 667 IISLGTSSQYSSLXIFQSFCKYGLKWF 587
           ++  G S  Y    IF+S CK  + WF
Sbjct: 109 VVKHGGSCLYVPPGIFKSTCKMDITWF 135


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 667 IISLGTSSQYSSLXIFQSFCKYGLKWF 587
           ++  G S  Y    IF+S CK  + WF
Sbjct: 109 VVKHGGSCLYVPPGIFKSTCKMDITWF 135


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 515 GARITTFLVLLLXNGG 468
           G  +TTFLV+L   GG
Sbjct: 372 GGALTTFLVILFQYGG 387


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 667 IISLGTSSQYSSLXIFQSFCKYGLKWF 587
           ++    S  Y    IF+S CK  + WF
Sbjct: 109 VVKHNGSCLYVPPGIFKSTCKMDITWF 135


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 667 IISLGTSSQYSSLXIFQSFCKYGLKWF 587
           ++    S  Y    IF+S CK  + WF
Sbjct: 109 VVKHNGSCLYVPPGIFKSTCKIDITWF 135


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,549
Number of Sequences: 336
Number of extensions: 3818
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)