BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0595 (750 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 30 0.40 SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 28 1.6 SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.2 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 27 2.9 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 27 3.8 SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 5.0 SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 5.0 SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 26 5.0 SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 26 5.0 SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 26 6.6 SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 8.7 SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 8.7 >SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting protein homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 455 Score = 29.9 bits (64), Expect = 0.40 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 7/121 (5%) Frame = +3 Query: 30 NTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPKSR--KMPND 203 N+P+ + TPN+ + ++ + S S + N +++ +E + +P SR N+ Sbjct: 69 NSPSIMKNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKVNPASRNKSQSNN 128 Query: 204 KAIHTKGNMVQNKLSPQNRFTDF--KKYSSTFDNIQSLIREG--KVEEA-PPTECNETVN 368 + H K + +SP +D +K S +N S EG +E+A E ++ +N Sbjct: 129 ISSHEKSSKTTKNVSPGVMTSDLIPEKKSVKHNNSSSNRIEGLADIEKAIRQIEISQNIN 188 Query: 369 E 371 + Sbjct: 189 K 189 >SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 344 Score = 27.9 bits (59), Expect = 1.6 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = +3 Query: 3 LNSRLSRELNTPNSRYSIDLCTPNSRL--SKEINSPKSRLSLDLN 131 LN+ L E+ PNS + C NS+L ++ P S SL N Sbjct: 12 LNNTLLSEVPEPNSVFYTPKCFSNSKLPHQSDLEEPSSACSLSKN 56 >SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 27.5 bits (58), Expect = 2.2 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = +3 Query: 264 TDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMTVPPN 392 T+F ++ NI + +G V PT+ N T N PN Sbjct: 53 TEFNDPNAMLQNILQSLGQGVVPNVNPTDANRTANPNTNSNPN 95 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 27.1 bits (57), Expect = 2.9 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = +3 Query: 570 SQXRDQNHFNPYLQKDWNIXXDEYWDEVPNDIIEN 674 S+ +D NHF P + N DE PND I + Sbjct: 114 SKVKDANHFPPNYPEPKNDSVSSNIDEFPNDSISS 148 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 26.6 bits (56), Expect = 3.8 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = +3 Query: 39 NSRYSI-DLCTPNSRLSKEINSPKSRLSLDLNN-GQERYITQEYFGHSPKSRKMP 197 NSR SI D+ T + S + +S+ +NN G++ +I++ GHSP ++P Sbjct: 1351 NSRLSIPDVRTFQDNFIDSLPSIWNVVSITINNSGEDLFISKIRKGHSPLIFRLP 1405 >SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces pombe|chr 2|||Manual Length = 406 Score = 26.2 bits (55), Expect = 5.0 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Frame = +3 Query: 9 SRLSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPKSR 188 SR S L+ + TPN+ L++ +SPKS +S Y T+ + ++ Sbjct: 68 SRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRA--AANLRNN 125 Query: 189 KMPNDKAIHTKGNMVQNKLSPQ-----NRFTDFKKYSSTFDNIQSLIREGKVEE 335 + ++ A+ T +++ + + + + +F+K SS D +Q + ++EE Sbjct: 126 SINSEAALSTTSSLLDDDFARRLEEIDRQVQEFEKSSSDMD-VQIHTHKREIEE 178 >SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosaccharomyces pombe|chr 1|||Manual Length = 988 Score = 26.2 bits (55), Expect = 5.0 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Frame = +3 Query: 129 NNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNKLSPQNRFTDFKKYS----STFD 296 N+ + + +T+ PK ++PN + T + + LS QN F S + Sbjct: 534 NDLKHQLLTELEVSKRPKKPELPNQENKTTNEKVYRKPLSSQNTFDTLPTISQGLLAATQ 593 Query: 297 NIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRVVSLPSLGPDGESNSASR 455 + S++ + + P + + V + P V++ PS S A+R Sbjct: 594 PVTSVLNTSPLPKTPEKDRSLNVTPSSST-PTPASVLAPPSSASLSSSKDANR 645 >SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 836 Score = 26.2 bits (55), Expect = 5.0 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = +3 Query: 18 SRELNTPNSRYS---IDLCTPNSRLSKEINSPKSRLSLDLNNGQERY 149 S +N N+RYS D + + E SPK RLS+D ++ Q Y Sbjct: 790 SSGINVSNTRYSKRKSDFQVDDQQADDE--SPKKRLSIDSSSAQNGY 834 >SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosaccharomyces pombe|chr 1|||Manual Length = 942 Score = 26.2 bits (55), Expect = 5.0 Identities = 12/44 (27%), Positives = 19/44 (43%) Frame = +3 Query: 273 KKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRV 404 KK T D + L+RE + PP E + + +P V + Sbjct: 169 KKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTI 212 >SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 |Schizosaccharomyces pombe|chr 2|||Manual Length = 315 Score = 25.8 bits (54), Expect = 6.6 Identities = 12/42 (28%), Positives = 22/42 (52%) Frame = +3 Query: 117 SLDLNNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNK 242 ++DLN ++ I +Y + +S PND A N +++K Sbjct: 44 NIDLNKHTQKNIDSKYVACNSRSVTPPNDVASSVSKNTLRHK 85 >SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosaccharomyces pombe|chr 2|||Manual Length = 399 Score = 25.4 bits (53), Expect = 8.7 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = +3 Query: 243 LSPQNRFTDFKKYSSTFDNIQSLIREGKVEEA 338 +SP ++F F SS F N+ + E K E++ Sbjct: 137 VSPFSQFASFSNASSPFSNVSTASSEPKEEKS 168 >SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 25.4 bits (53), Expect = 8.7 Identities = 16/67 (23%), Positives = 28/67 (41%) Frame = +3 Query: 6 NSRLSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPKS 185 NS +SR N +S + N S+ + + ++ + E Y Y H P Sbjct: 80 NSHISRN---ENELFSKENSIYNGNFSENLGVQPNPQTISHESVNEEYTELPYDAHLPSE 136 Query: 186 RKMPNDK 206 +K+P+ K Sbjct: 137 QKVPDRK 143 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,994,600 Number of Sequences: 5004 Number of extensions: 61924 Number of successful extensions: 205 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 205 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 357280532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -