Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0595
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    30   0.40 
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    28   1.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   2.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   3.8  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    26   5.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.0  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    26   5.0  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   5.0  
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    26   6.6  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    25   8.7  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    25   8.7  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +3

Query: 30  NTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPKSR--KMPND 203
           N+P+   +    TPN+ + ++  +  S  S  + N +++   +E +  +P SR     N+
Sbjct: 69  NSPSIMKNKKNVTPNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKVNPASRNKSQSNN 128

Query: 204 KAIHTKGNMVQNKLSPQNRFTDF--KKYSSTFDNIQSLIREG--KVEEA-PPTECNETVN 368
            + H K +     +SP    +D   +K S   +N  S   EG   +E+A    E ++ +N
Sbjct: 129 ISSHEKSSKTTKNVSPGVMTSDLIPEKKSVKHNNSSSNRIEGLADIEKAIRQIEISQNIN 188

Query: 369 E 371
           +
Sbjct: 189 K 189


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 3   LNSRLSRELNTPNSRYSIDLCTPNSRL--SKEINSPKSRLSLDLN 131
           LN+ L  E+  PNS +    C  NS+L    ++  P S  SL  N
Sbjct: 12  LNNTLLSEVPEPNSVFYTPKCFSNSKLPHQSDLEEPSSACSLSKN 56


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 264 TDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMTVPPN 392
           T+F   ++   NI   + +G V    PT+ N T N      PN
Sbjct: 53  TEFNDPNAMLQNILQSLGQGVVPNVNPTDANRTANPNTNSNPN 95


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 570 SQXRDQNHFNPYLQKDWNIXXDEYWDEVPNDIIEN 674
           S+ +D NHF P   +  N       DE PND I +
Sbjct: 114 SKVKDANHFPPNYPEPKNDSVSSNIDEFPNDSISS 148


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +3

Query: 39   NSRYSI-DLCTPNSRLSKEINSPKSRLSLDLNN-GQERYITQEYFGHSPKSRKMP 197
            NSR SI D+ T        + S  + +S+ +NN G++ +I++   GHSP   ++P
Sbjct: 1351 NSRLSIPDVRTFQDNFIDSLPSIWNVVSITINNSGEDLFISKIRKGHSPLIFRLP 1405


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
 Frame = +3

Query: 9   SRLSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPKSR 188
           SR S  L+       +   TPN+ L++  +SPKS +S         Y T+     + ++ 
Sbjct: 68  SRQSTILDADEGNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRA--AANLRNN 125

Query: 189 KMPNDKAIHTKGNMVQNKLSPQ-----NRFTDFKKYSSTFDNIQSLIREGKVEE 335
            + ++ A+ T  +++ +  + +      +  +F+K SS  D +Q    + ++EE
Sbjct: 126 SINSEAALSTTSSLLDDDFARRLEEIDRQVQEFEKSSSDMD-VQIHTHKREIEE 178


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
 Frame = +3

Query: 129 NNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNKLSPQNRFTDFKKYS----STFD 296
           N+ + + +T+      PK  ++PN +   T   + +  LS QN F      S    +   
Sbjct: 534 NDLKHQLLTELEVSKRPKKPELPNQENKTTNEKVYRKPLSSQNTFDTLPTISQGLLAATQ 593

Query: 297 NIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRVVSLPSLGPDGESNSASR 455
            + S++    + + P  + +  V    +  P    V++ PS      S  A+R
Sbjct: 594 PVTSVLNTSPLPKTPEKDRSLNVTPSSST-PTPASVLAPPSSASLSSSKDANR 645


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 18  SRELNTPNSRYS---IDLCTPNSRLSKEINSPKSRLSLDLNNGQERY 149
           S  +N  N+RYS    D    + +   E  SPK RLS+D ++ Q  Y
Sbjct: 790 SSGINVSNTRYSKRKSDFQVDDQQADDE--SPKKRLSIDSSSAQNGY 834


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 273 KKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRV 404
           KK   T D +  L+RE   +  PP    E +   + +P   V +
Sbjct: 169 KKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTI 212


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 117 SLDLNNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNK 242
           ++DLN   ++ I  +Y   + +S   PND A     N +++K
Sbjct: 44  NIDLNKHTQKNIDSKYVACNSRSVTPPNDVASSVSKNTLRHK 85


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 243 LSPQNRFTDFKKYSSTFDNIQSLIREGKVEEA 338
           +SP ++F  F   SS F N+ +   E K E++
Sbjct: 137 VSPFSQFASFSNASSPFSNVSTASSEPKEEKS 168


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +3

Query: 6   NSRLSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPKS 185
           NS +SR     N  +S +    N   S+ +    +  ++   +  E Y    Y  H P  
Sbjct: 80  NSHISRN---ENELFSKENSIYNGNFSENLGVQPNPQTISHESVNEEYTELPYDAHLPSE 136

Query: 186 RKMPNDK 206
           +K+P+ K
Sbjct: 137 QKVPDRK 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,600
Number of Sequences: 5004
Number of extensions: 61924
Number of successful extensions: 205
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)