Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0595
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0367 - 16840732-16843428,16844425-16844760 33 0.18
05_07_0313 - 29159638-29161065 32 0.56
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 32 0.56
01_05_0596 + 23511148-23512650 31 1.3
12_01_1095 + 11436012-11436053,11436322-11436595,11470730-114707... 29 3.9
09_01_0001 - 66206-66907 29 3.9
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 29 3.9
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 5.2
08_01_0748 + 7034074-7034076,7034136-7034876 29 5.2
06_03_1248 + 28685911-28687719 28 9.1
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 28 9.1
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 33.5 bits (73), Expect = 0.18
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Frame = +3
Query: 15 LSRELNTP--NSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFGHSP--- 179
LS EL++P NS+ +L P ++L K+I + L LD + ER E F
Sbjct: 265 LSNELSSPKENSKELSELVDPRNKLVKKIKGKRIFLVLD-DVWNERMDCWEAFQDPMLAA 323
Query: 180 -------KSRKMPNDKAIHTKGNMVQNKLSPQNRFTDFKKYSSTFDN 299
+R +P + + T + N LSPQ +T FK+ +T +N
Sbjct: 324 QQCKILVTTRNLPVARLVQTMPHYSMNHLSPQESWTLFKRTVTTPEN 370
>05_07_0313 - 29159638-29161065
Length = 475
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -3
Query: 460 ACRLALLLSPSGPRLGRETTLTILGGTVINSLTVSLHSVGGASSTLP 320
A + L +SP G L +T + G V+ TVS+H GGAS LP
Sbjct: 376 AAAVGLRVSPGGFSLF-DTCYNLSGRRVVKVPTVSMHLAGGASVALP 421
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 31.9 bits (69), Expect = 0.56
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +3
Query: 96 NSPKSRLSLDLNNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNKLSPQNRFTDFK 275
N+ L ++ N+ RY Q+ + K+ K +D ++G N L FTD
Sbjct: 450 NTEPDNLYIEFNSSNGRYEEQKKMQKAQKNSKDISDLVQTSEGGSSSNILESDLSFTDGA 509
Query: 276 KYSSTFDNIQSLIREGKVEEAP 341
YS+ +S EG + +AP
Sbjct: 510 CYSANGVTTES-SHEGNIYQAP 530
>01_05_0596 + 23511148-23512650
Length = 500
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -3
Query: 460 ACRLALLLSPSGPRLGRETTLTILGGTVINSLTVSLHSVGGASSTLP 320
A L LSP G L +T + G V+ TVS+H GGA + LP
Sbjct: 401 AAAAGLRLSPGGFSLF-DTCYDLSGLKVVKVPTVSMHFAGGAEAALP 446
>12_01_1095 +
11436012-11436053,11436322-11436595,11470730-11470762,
11470770-11471494
Length = 357
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/99 (26%), Positives = 42/99 (42%)
Frame = +3
Query: 201 DKAIHTKGNMVQNKLSPQNRFTDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMT 380
DKA H + N + K+ K S +Q + E K E PPT V T
Sbjct: 246 DKAAHDRENWNRGKIC---------KLESKVYRLQKELAELKGETPPPTPKLRLVARKRT 296
Query: 381 VPPNMVRVVSLPSLGPDGESNSASRQALITTVXEEEDQE 497
PP +++ S + GE+ + +I + +EE++E
Sbjct: 297 CPPPRLQLAS--KIRVMGEAVPDRAEPVIDIISDEEEEE 333
>09_01_0001 - 66206-66907
Length = 233
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/99 (26%), Positives = 42/99 (42%)
Frame = +3
Query: 201 DKAIHTKGNMVQNKLSPQNRFTDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMT 380
DKA H + N + K+ K S +Q + E K E PPT V T
Sbjct: 122 DKAAHDRENWNRGKIC---------KLESKVYRLQKELAELKGETPPPTPKLRLVARKRT 172
Query: 381 VPPNMVRVVSLPSLGPDGESNSASRQALITTVXEEEDQE 497
PP +++ S + GE+ + +I + +EE++E
Sbjct: 173 CPPPRLQLAS--KIRVMGEAVPDRAEPVIDIISDEEEEE 209
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 306 SLIREGKVEEAPPTECNETVNELMTVPPNMVRVVS 410
+++ +G + +AP E T+NEL + P N V VVS
Sbjct: 566 TVMPQGLINKAPSEEVIRTLNELCSDPMNTVFVVS 600
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 72 NSRLSKE--INSP-KSRLSLDLNNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNK 242
NSR +KE +N+P KS SL + G+ +T+ S ++ A+ +
Sbjct: 752 NSRSTKERQVNAPDKSAHSLKVKKGKTDTLTENSLSCSEMLSQL--SLAVFNLKKKERFS 809
Query: 243 LSPQNRFTDFKKYS 284
+ N FTDF+KYS
Sbjct: 810 SAGMNFFTDFRKYS 823
>08_01_0748 + 7034074-7034076,7034136-7034876
Length = 247
Score = 28.7 bits (61), Expect = 5.2
Identities = 25/99 (25%), Positives = 42/99 (42%)
Frame = +3
Query: 201 DKAIHTKGNMVQNKLSPQNRFTDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMT 380
DKA H + N + K+ K S +Q + E K E PPT + T
Sbjct: 136 DKAAHDRENWNRGKIC---------KLESKVYRLQKELAELKGETPPPTPKLRLIARKRT 186
Query: 381 VPPNMVRVVSLPSLGPDGESNSASRQALITTVXEEEDQE 497
PP +++ S + GE+ + +I + +EE++E
Sbjct: 187 CPPPRLQLAS--KIRVMGEAVPDRAEPVIDIISDEEEEE 223
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Frame = +3
Query: 189 KMPNDKAIHTKGNMVQNKLSPQNRFTDFKKYSSTFD--NIQSLIREGKVEEAPPTECNET 362
+M ++ I T + + P+ R + + + D + ++ + KVEE E E
Sbjct: 390 EMAVEEEIKTDESQQEETPKPEERMENSETSVISEDPKEMDAISEDQKVEEPVVAEEQEE 449
Query: 363 VNEL--MTVPPNMVRVVSLPSLGPDG---ESNSASRQALITTVXEEEDQE 497
++E+ M V P++ + P D E+ A+ TTV EEED++
Sbjct: 450 LSEVVKMAVEPSISSEPATPLEEEDRDDVETEQANSSEPATTVEEEEDRD 499
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 249 PQNRFTDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRVVS 410
P R +D + +D +++ EG +++AP E +N L P N V +VS
Sbjct: 570 PSYRKSDNRLILLDYDG--TVMPEGSIDKAPSNEVISVLNRLCEDPKNRVFIVS 621
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,014,938
Number of Sequences: 37544
Number of extensions: 402136
Number of successful extensions: 1123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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