Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0595
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)                45   8e-05
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 30   1.7  
SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)                 29   4.0  
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)                  29   4.0  

>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
          Length = 1281

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +3

Query: 6   NSRLSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLD---LNNGQERYITQEYFGHS 176
           N R S +L+ PN R S DL  PN R S +++ P  R S D   L N  +           
Sbjct: 608 NKRASDDLSLPNKRASDDLSLPNKRASDDLSLPNKRASDDHPSLQNNADPARCDSQIQRG 667

Query: 177 PKSRKMPNDKAIHTKGNM-VQNKLSPQNRFTDFKKYSSTFD 296
            K +   +     TKG+   + KLSP +RF D     ST D
Sbjct: 668 EKLQDFHSQPTPVTKGSRNTETKLSP-SRFQDSGVGDSTID 707



 Score = 35.1 bits (77), Expect = 0.061
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 9   SRLSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQER 146
           S+ S + + PN R S DL  PN R S +++ P  R S DL+   +R
Sbjct: 598 SKASDDPSLPNKRASDDLSLPNKRASDDLSLPNKRASDDLSLPNKR 643


>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -1

Query: 228 CFLWYELLYR---WAFSCFSGCDR 166
           C  WYEL      W F CF GCDR
Sbjct: 43  CKSWYELTKDSSLWKFVCFPGCDR 66


>SB_14616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1307

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 306 SLIREGKVEEAPPTECNETVNELMTVPPNMVRVVSLPSLGPDGE-SNSASRQALITT 473
           ++IR  K EE    E +++ ++  +  PN++R  S  SLG  G+ S S  R+A + +
Sbjct: 507 TIIRARKEEENEEEEDDDSEDDRSSSSPNLLRSESSSSLGGSGQISPSGVRRAQVNS 563


>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
          Length = 1158

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 234 QNKLSPQNRFTDFKKYSSTFDNIQSLIREGKVEEAPPTECNETVN 368
           + + +PQN       Y+ST  N   ++ EG    A PT C+   N
Sbjct: 294 ERRSAPQNEIRPI--YNSTTTNAARIVNEGCTVSAKPTACHTPAN 336


>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
          Length = 794

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 243 LSPQNRFTDFKK-YSSTFDNIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRVVSLPS 419
           L P++ +   ++ + +T  N QS+  +     + PT   E   ++ T+P +  + +S+PS
Sbjct: 527 LPPRDNYNHMRQMFPATLRNNQSINSQVARPASDPTPVREPCYDMNTMPEHFQQTLSMPS 586

Query: 420 L 422
           L
Sbjct: 587 L 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,112,858
Number of Sequences: 59808
Number of extensions: 456003
Number of successful extensions: 1441
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)