Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0595
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16730.1 68418.m01959 expressed protein weak similarity to mi...    32   0.47 
At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase, put...    30   1.9  
At5g36170.2 68418.m04359 peptide chain release factor, putative ...    29   2.5  
At5g23100.1 68418.m02702 expressed protein contains Pfam profile...    29   2.5  
At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplas...    29   2.5  
At5g36170.3 68418.m04360 peptide chain release factor, putative ...    29   4.4  
At5g36170.1 68418.m04358 peptide chain release factor, putative ...    29   4.4  
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea...    29   4.4  
At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative...    28   5.8  
At4g29250.1 68417.m04183 transferase family protein low similari...    28   5.8  
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple...    28   5.8  
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    28   7.6  

>At5g16730.1 68418.m01959 expressed protein weak similarity to
           microtubule binding protein D-CLIP-190 [Drosophila
           melanogaster] GI:2773363, SMC2-like condensin
           [Arabidopsis thaliana] GI:14279543
          Length = 853

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 18  SRELNTPNSRYSIDLCTPNSRLSKEINSPK 107
           S    TP+SR S+D  +PNS+ S E  SPK
Sbjct: 44  SPSTTTPHSRLSLDRSSPNSKSSVERRSPK 73


>At3g10370.1 68416.m01243 glycerol-3-phosphate dehydrogenase,
           putative similar to glycerol-3-phosphate dehydrogenase
           GB:BAA08926 from Mus musculus [SP|Q64521], Homo sapiens
           [GI:1020315], Rattus norvegicus [SP|P35571]; contains
           Pfam profile PF01266 FAD dependent oxidoreductase
          Length = 629

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 240 CFAPCFLWYELLYRW 196
           C  PCF W+E++Y W
Sbjct: 164 CMTPCFDWFEVIYFW 178


>At5g36170.2 68418.m04359 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 455

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 15  LSRELNTPNSRYSIDLCTPNSRLSKEINSP-----KSRLSLDLNNGQERYITQEYF 167
           L R  N P  R S+ L  PN   S   NSP     +S LS+   N    ++ Q+++
Sbjct: 26  LLRPTNLPLLRLSLPLSLPNFSSSSRFNSPIFAAQESNLSVSNENETSEWLMQDFY 81


>At5g23100.1 68418.m02702 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 277

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +3

Query: 15  LSRELNTPNSRYSIDLCTPNSRLSKEINSPKSRLSLDLNNGQERYITQEYFG 170
           + ++ N+P + + I+L TP S L KE+ S   R++L+ + G+E    +E  G
Sbjct: 106 IQKDPNSPPA-FLIELATPISGLVKEMASGLVRIALECDKGKEEEEGEEKNG 156


>At4g17300.1 68417.m02598 asparaginyl-tRNA synthetase, chloroplast,
           mitochondrial / asparagine-tRNA ligase / AsnRS (SYNO)
           nearly identical to SP|O48593
          Length = 567

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +3

Query: 78  RLSKEINSPKSRLSLDLNNGQERYITQEYFGHSPK-SRKMPND-KAIHTKGN 227
           + +K+ + P  +  LDL +  ERYIT+E FG  P   R  P + KA + + N
Sbjct: 422 KANKKFDFPV-KWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMREN 472


>At5g36170.3 68418.m04360 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 391

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 15  LSRELNTPNSRYSIDLCTPNSRLSKEINSP------KSRLSLDLNNGQERYITQEYF 167
           L R  N P  R S+ L  PN   S   NSP      +S LS+   N    ++ Q+++
Sbjct: 26  LLRPTNLPLLRLSLPLSLPNFSSSSRFNSPIVFAAQESNLSVSNENETSEWLMQDFY 82


>At5g36170.1 68418.m04358 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 456

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
 Frame = +3

Query: 15  LSRELNTPNSRYSIDLCTPNSRLSKEINSP------KSRLSLDLNNGQERYITQEYF 167
           L R  N P  R S+ L  PN   S   NSP      +S LS+   N    ++ Q+++
Sbjct: 26  LLRPTNLPLLRLSLPLSLPNFSSSSRFNSPIVFAAQESNLSVSNENETSEWLMQDFY 82


>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
           and autoantigen locus HSU17474 (GI:596134) [Homo
           sapiens]
          Length = 1322

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 168 GHSPKSRKMPNDKAIHTKGNMVQNKLSPQNRFTDFKKYSS 287
           G  PK R++  + A++     +Q ++ PQ   T   KY S
Sbjct: 139 GKMPKGRRLVGEHAVYDVDVRLQGEIQPQLEVTPITKYGS 178


>At5g17000.1 68418.m01991 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 345

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 192 MPNDKAIHTKGNMVQNKLSPQNR--FTDFKKYSSTFDNIQSLIREGKV 329
           + N + +H   N++  ++  Q    F  ++KYS   D +   I+EGK+
Sbjct: 262 LENQEGVHNLSNIIYKRIRIQGFAVFDFYEKYSKFLDFVLPHIKEGKI 309


>At4g29250.1 68417.m04183 transferase family protein low similarity
           to CER2 Arabidopsis thaliana GI:1213594, anthocyanin
           5-aromatic acyltransferase Gentiana triflora GI:4185599;
           contains Pfam profile PF02458 transferase family
          Length = 460

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = +3

Query: 114 LSLDLNNGQERYITQEYFGHSPKSRKMPNDKAIHTKGNMVQNKLSPQNRFTDFKKYSSTF 293
           +SL L+  +   + Q YFG+     K+P  K + TK  ++ + +      T    Y +  
Sbjct: 294 MSLCLDVRKLLRLDQSYFGNCMVYHKVPYSKPVKTKDKLLFHAVQEIESITKRLDYDTVM 353

Query: 294 DNIQSL-IREGKVEEAPPTECNETVN 368
           D I+ L    G +       C    N
Sbjct: 354 DLIEWLSSNNGAISNGSDLVCTNLEN 379


>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
           BAF60b domain-containing protein / GYF domain-containing
           protein contains Pfam profiles PF02201: BAF60b domain of
           the SWIB complex, PF02213: GYF domain, PF00628:
           PHD-finger
          Length = 824

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 249 PQNRFTDFKK-YSSTFD-NIQSLIREGKVEEAPPTECNETVNELMTVPPNMVRVVSLPS 419
           P N+  DF   +S TF  N  S   + +   A P EC+E+V++L+     M     LPS
Sbjct: 709 PDNQEIDFLDLFSPTFKFNFASTTTDWQPIVAGPDECDESVSDLLAEVEAMESQKRLPS 767


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 540 KIENNISAILSQXRDQNHFNPYLQKDWNIXXDEYWDEVPNDIIENNYRYSSRERQKRHDI 719
           K+     AILS     N  NP++ +   +   E W +   ++     + S+RE  +R  +
Sbjct: 220 KLIQGSGAILSPGVSANS-NPFMSQSLAMVPPETWLQNERELKRERRKQSNRESARRSRL 278

Query: 720 QKSSSXNEI 746
           +K +   E+
Sbjct: 279 RKQAETEEL 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,042
Number of Sequences: 28952
Number of extensions: 325745
Number of successful extensions: 914
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)