Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0594
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p...    30   2.0  
U00047-11|AAU20827.1|  313|Caenorhabditis elegans Hypothetical p...    28   6.2  
U00047-10|AAA50686.1|  471|Caenorhabditis elegans Hypothetical p...    28   6.2  
U40419-7|AAL02444.1|  413|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
            protein 2, isoform a protein.
          Length = 1538

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 284  NFTDHSQMYFSSNYYKITHGHTAPN*NSLCNGYQRWTSTR 403
            NF+++ +M  S+ + KI   H + + + L   Y RW+  R
Sbjct: 1479 NFSENDEMRCSTGFRKIPTSHRSVDKDCLAEAYDRWSLQR 1518


>U00047-11|AAU20827.1|  313|Caenorhabditis elegans Hypothetical
           protein ZK418.2b protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 538 DHDNYKCSTITSIDSRKPKKKK-MAVVNLNSTF*RIY 645
           D+ +Y C T+ ++DS K   K  +A++N+  T  + Y
Sbjct: 36  DNGSYSCDTLVTLDSFKTMTKNGVAIINVGMTIGKEY 72


>U00047-10|AAA50686.1|  471|Caenorhabditis elegans Hypothetical
           protein ZK418.2a protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 538 DHDNYKCSTITSIDSRKPKKKK-MAVVNLNSTF*RIY 645
           D+ +Y C T+ ++DS K   K  +A++N+  T  + Y
Sbjct: 194 DNGSYSCDTLVTLDSFKTMTKNGVAIINVGMTIGKEY 230


>U40419-7|AAL02444.1|  413|Caenorhabditis elegans Hypothetical
           protein C27F2.10 protein.
          Length = 413

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 652 KLSKYVKTYCLNSQLPFFFSSVFASRS 572
           K+SK+V TY  ++Q PF     + SRS
Sbjct: 28  KISKFVSTYDEHAQEPFMHIEAYGSRS 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,938
Number of Sequences: 27780
Number of extensions: 294264
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)