Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0594
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    24   1.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   3.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.1  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 709 IIFFT*IKPEKXHPMEQEXKLSKYVKTYCL 620
           I+ F  +KP K    +Q  KL+K ++  CL
Sbjct: 12  IVTFVALKPVKSMSADQVEKLAKNMRKSCL 41


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 29  KAQHFPFSFHFIINS 73
           +  H PF++H ++NS
Sbjct: 492 RLNHKPFTYHIVVNS 506


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 29  KAQHFPFSFHFIINS 73
           +  H PF++H ++NS
Sbjct: 492 RLNHKPFTYHIVVNS 506


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 29  KAQHFPFSFHFIINS 73
           +  H PF++H ++NS
Sbjct: 118 RLNHKPFTYHIVVNS 132


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 380 YQRWTSTRLYIYTYVRIEPMILG*QLH 460
           ++ WT   L +  Y   EP+IL  +LH
Sbjct: 160 FESWTHNVLDMVLYWDQEPIILADELH 186


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 29  KAQHFPFSFHFIINS 73
           +  H PF+FH  IN+
Sbjct: 494 RLNHKPFNFHITINA 508


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 29  KAQHFPFSFHFIINS 73
           +  H PF+FH  IN+
Sbjct: 494 RLNHKPFNFHITINA 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,987
Number of Sequences: 438
Number of extensions: 3808
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)