Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0593
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0609 + 4517467-4517529,4517627-4517701,4517914-4518030,451...    32   0.40 
11_01_0519 + 4066776-4066892,4067042-4067099,4067322-4067608,406...    29   3.8  
06_03_1477 + 30408296-30409123,30409227-30410264                       28   6.6  

>07_01_0609 +
           4517467-4517529,4517627-4517701,4517914-4518030,
           4518533-4518647,4519328-4519433,4519684-4519801,
           4519905-4519972,4520697-4520830,4520932-4520975,
           4521100-4521176,4521415-4521562,4522155-4522216,
           4522373-4522472
          Length = 408

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 367 CGKYDELIEPPDAINEKYGDKIIDIMKNALMDGQSVSIEALNNKGLSPIDRIK 525
           C     LI+ P    + Y DKI+      L D + VS   L   G  P+D +K
Sbjct: 287 CNDTGALIQDPQKRFQVYNDKIVKFSTRELSDVKRVSSHHLRLLGFKPLDYLK 339


>11_01_0519 +
           4066776-4066892,4067042-4067099,4067322-4067608,
           4067706-4067822,4067898-4067958,4068042-4068133,
           4068547-4068632,4068926-4068975,4069077-4069117,
           4069222-4069392,4069875-4069942,4070088-4070148,
           4070471-4070757,4072008-4072172,4072759-4072760,
           4072829-4073139,4073600-4073787,4075231-4075482,
           4076035-4076114,4076199-4076399,4076959-4077014,
           4077137-4077328
          Length = 980

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 382 HHIYHTILKDELLYWIYHTRNHS 314
           HH  H   K+++L W+YH   HS
Sbjct: 229 HHTSHPWSKNKILIWMYHKLPHS 251


>06_03_1477 + 30408296-30409123,30409227-30410264
          Length = 621

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 430 IIDIMKNALMDGQSVSIEALNNKGLSPIDRIKVGMKXEVXNLID 561
           IID+++N  ++GQ  S  AL +  +   +++ +G    +  L+D
Sbjct: 430 IIDVLRNGSVEGQENSAAALFSLSMVDENKVAIGTLGGIPPLVD 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,467
Number of Sequences: 37544
Number of extensions: 321662
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)