Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0593
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10198| Best HMM Match : MBT (HMM E-Value=0) 101 6e-22
SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 2e-14
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 74 8e-14
SB_45976| Best HMM Match : MBT (HMM E-Value=0) 71 5e-13
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_3663| Best HMM Match : MBT (HMM E-Value=0) 47 1e-05
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15) 28 5.0
SB_53199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
Length = 753
Score = 101 bits (241), Expect = 6e-22
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVC-HRNNPDVYWIAEITMVCGH 285
F W +YL+ ++ +VP+ F HV+ + +G ++ M +E +++N YW+A I MV G
Sbjct: 43 FIWEDYLKKCRAKSVPKSAFKHVKENPTSGFRRGMKVEAKDYKSNSGTYWVATIIMVSGP 102
Query: 286 VLRIKFIG----AESDFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYGDKIIDIMKNA 453
+L ++F G DFWCD S V P+GWC K + ++ PP A+ ++ + +M N
Sbjct: 103 LLLLRFDGYGNDRSEDFWCDASTPDVQPIGWCAKTNTILIPPQALRQQNTNWAQFLMDN- 161
Query: 454 LMDGQSVSIEALNNKGLSPIDRIKVGMKXEVXNLIDPYRYWIATV 588
L D + + + +G E+ + DP YW+A+V
Sbjct: 162 LKDAVAAPESLFKQQEAGESSGVPIGTMLELQDYDDPLCYWVASV 206
Score = 80.2 bits (189), Expect = 1e-15
Identities = 50/165 (30%), Positives = 74/165 (44%), Gaps = 6/165 (3%)
Frame = +1
Query: 112 DWNNYL--ETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGH 285
+W +L +VA PE LF E +G+ +LE+ ++P YW+A + G
Sbjct: 153 NWAQFLMDNLKDAVAAPESLFKQQEAGESSGVPIGTMLELQDYDDPLCYWVASVVERFGL 212
Query: 286 VLRIKFIGAES---DFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYG-DKIIDIMKNA 453
L++++ GAES D W + VH LGW +Y ++ P + + IID +
Sbjct: 213 RLKLRYAGAESEEHDVWVYYLSDNVHKLGWGKRYGLTLQAPKGLTNRVDMSAIIDDLNRL 272
Query: 454 LMDGQSVSIEALNNKGLSPIDRIKVGMKXEVXNLIDPYRYWIATV 588
+ S N L PI K GMK E N DP +ATV
Sbjct: 273 STTSNNGSTSLKKNDQLPPIHGFKSGMKLEAVNPTDPSSICVATV 317
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGHV 288
F W+ YL +S+ LF +T +G + LE ++ DV A + + G
Sbjct: 345 FHWDAYLISSRQEPALASLFD--QTVPNHGFEAGYKLEAVNQIERDVISAATVKQIMGRT 402
Query: 289 LRIKFIGAESDFW---CDISNTKVHPLGWCGKYDELIEPPDAIN 411
+ I+ SD D+ + + P+GWCG + P A N
Sbjct: 403 MWIQLDAYTSDVVEHIYDVESCDLFPVGWCGMQGHPLLTPQAKN 446
>SB_21040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 76.2 bits (179), Expect = 2e-14
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Frame = +1
Query: 115 WNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGHVLR 294
W+ YL+ A P+ F H + G+K M LE RNNP + +A + GH +
Sbjct: 241 WSKYLKAINVKAAPDNCFKHTTLDV-PGLKPGMKLEAVDRNNPPSFCVATVIRCSGHRVC 299
Query: 295 IKF--IGAES--DFWCDISNTKVHPLGWCGKYDELIEPPDAIN---EKYGDKIIDIMKNA 453
I++ GA+S D WC+ ++HP+GWC + ++PP + E + + + A
Sbjct: 300 IRYDGYGADSSNDIWCNFQADELHPIGWCAQNGYPLQPPKGVGSNLEDWRTFLTQTLTGA 359
Query: 454 LMDGQSVSIEALNNKGLSP-IDRIKVGMKXEVXNLIDPYRYWIATV 588
L Q + +A + P + +VGMK EV + + P ATV
Sbjct: 360 LAAPQDLFKKA--QEIFKPRVHGFEVGMKLEVVHPLKPSIICPATV 403
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/102 (29%), Positives = 47/102 (46%)
Frame = +1
Query: 64 NVIGFWF*SVLIMAEFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNP 243
N IG F S F W+ YL ++ P +LF + + K M +E NP
Sbjct: 445 NGIGLTFPSDYTKKTFSWDKYLSLCRATVAPSQLFKQKLKA--HKFKAGMKVEAVDLENP 502
Query: 244 DVYWIAEITMVCGHVLRIKFIGAESDFWCDISNTKVHPLGWC 369
+A IT + G VL++ F G + D+ + ++P+GWC
Sbjct: 503 SSICVATITNIVGRVLQLFFDGQSRFQFVDVDSPDIYPIGWC 544
Score = 37.1 bits (82), Expect = 0.011
Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 12/171 (7%)
Frame = +1
Query: 112 DWNNYLETSKS--VAVPEELFSHVETSL---YNGIKQNMLLEVCHRNNPDVYWIAEITMV 276
DW +L + + +A P++LF + +G + M LEV H P + A +T
Sbjct: 347 DWRTFLTQTLTGALAAPQDLFKKAQEIFKPRVHGFEVGMKLEVVHPLKPSIICPATVTKS 406
Query: 277 CGHVLRIKFIGAESDF-----WCDISNTKVHPLGWCGKYD-ELIEPPDAINEKYG-DKII 435
G + D C + + P+GWC + L P D + + DK +
Sbjct: 407 LGPYYFAITPDYQHDLPTTTMCCHSDSPGIFPVGWCYRNGIGLTFPSDYTKKTFSWDKYL 466
Query: 436 DIMKNALMDGQSVSIEALNNKGLSPIDRIKVGMKXEVXNLIDPYRYWIATV 588
+ + + Q + +K K GMK E +L +P +AT+
Sbjct: 467 SLCRATVAPSQLFKQKLKAHK-------FKAGMKVEAVDLENPSSICVATI 510
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 74.1 bits (174), Expect = 8e-14
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = +1
Query: 106 EFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGH 285
+F+W YL+ + A PE LF+ V + + G K M LE R NPD+ +A +T V G+
Sbjct: 580 DFNWEKYLKKQNATAAPEHLFTPVSPTKH-GFKTGMKLEAIDRKNPDLICVATVTNVIGN 638
Query: 286 VLRIKFIGAES--DFWCDISNTKVHPLGWCGKYDELIEPPD 402
+ F + D+WC+ +HP+GWC + PP+
Sbjct: 639 RFLVHFDEWDDTYDYWCEEDCPYIHPVGWCSANGGKLNPPN 679
Score = 55.2 bits (127), Expect = 4e-08
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGHV 288
F W +L T+ + A P ELF + SL K LE + NP + A I V +
Sbjct: 757 FSWEEHLRTTGATAAPPELFK--KRSL-PAFKPYQKLEAVDKRNPSLIRCATIARVEDYR 813
Query: 289 LRIKFIGAES--DFWCDISNTKVHPLGWCGKYDELIEPP 399
+ + F G + D W D +T++HP+G+C + +EPP
Sbjct: 814 VSVHFDGWDDVYDDWYDADSTELHPVGYCERTGHPLEPP 852
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSH------VETSLYNGIKQNMLLEVCHRNNPDVYWIAEIT 270
F W +YL TS + VP F V T K+NM LE +P + I
Sbjct: 469 FTWADYLYTSGAKPVPVSTFRQENPDIEVFTMPCEEFKKNMKLEAVDPKHPSYICVCTIV 528
Query: 271 MVCGHVLRIKFIGAES--DFWCDISNTKVHPLGWCGKYDELIEPPDAINEK 417
V G LR+ F G DFW + + + P+GWC K +++ P + K
Sbjct: 529 RVKGARLRLHFDGWSECYDFWTNADSPFIFPVGWCAKNGQVLHPQRGVLPK 579
>SB_45976| Best HMM Match : MBT (HMM E-Value=0)
Length = 839
Score = 71.3 bits (167), Expect = 5e-13
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 103 AEFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCG 282
++F+W YL K++ P LF V + + G K M LE R NPD+ +A +T V G
Sbjct: 522 SDFNWETYLTKMKALPAPSHLFKPVSPTKH-GFKTGMKLEAIDRKNPDLICVATVTNVIG 580
Query: 283 HVLRIKFIGAES--DFWCDISNTKVHPLGWCGKYDELIEPPD 402
+ + F + D+WC+ +HP+GWC + PP+
Sbjct: 581 NRFLVHFDEWDDTYDYWCEEDCPYIHPVGWCAANGGKLNPPN 622
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGHV 288
F W YL+ + S+A P ELF T G K LE + NP + A + V +
Sbjct: 629 FQWEEYLKKTNSLAAPPELFKKRFTP---GFKPGHRLEAVDKRNPSLIRAATVVKVVEYR 685
Query: 289 LRIKFIGAES--DFWCDISNTKVHPLGWCGKYDELIEPP 399
+ + F G + D W D +T+VHP+ +C K +E P
Sbjct: 686 VFVHFDGWDDIYDDWYDADSTEVHPVSYCEKTGHPLEAP 724
Score = 54.8 bits (126), Expect = 5e-08
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Frame = +1
Query: 121 NYLETSKSVAVPEELFSHVETSLY------NGIKQNMLLEVCHRNNPDVYWIAEITMVCG 282
+YL+ + AVP +F L K++M LE +P + I V G
Sbjct: 416 DYLQACNAKAVPVSVFQQGNPELLMFPKPCTEFKKDMKLEAVDPKHPSYICVCTIVRVKG 475
Query: 283 HVLRIKFIG-AES-DFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYGDKIIDIMKNAL 456
LR+ F G +ES DFW + + ++P+GWC K ++I PP ++ + + K
Sbjct: 476 ARLRLHFDGWSESYDFWTNADSPFIYPVGWCEKNGQIISPPRGFSKSDFNWETYLTKMKA 535
Query: 457 MDGQSVSIEALNNKGLSPIDR-IKVGMKXEVXNLIDPYRYWIATV 588
+ S K +SP K GMK E + +P +ATV
Sbjct: 536 LPAPSHLF-----KPVSPTKHGFKTGMKLEAIDRKNPDLICVATV 575
>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 70.1 bits (164), Expect = 1e-12
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Frame = +1
Query: 112 DWNNYLETSKSVA--VPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGH 285
+W +YL S A E ++ YN ++ M +EV R N +A I V G
Sbjct: 247 NWRDYLFKCLSGAKTFSAEFLQQLQDQPYNRFQKGMKVEVADRKNMYSMCVATIVDVIGD 306
Query: 286 VLRIKFIGAESD----FWCDISNTKVHPLGWCGKYDELIEPPDAIN---EKYGDKIIDIM 444
LR+++ G E+D FWC ++++HP+GW ++PP K+ + + D +
Sbjct: 307 RLRLRYDGLEADVAEDFWCHYLSSEIHPIGWSSLVGHTLQPPIGWKHSLSKWNEFLADDL 366
Query: 445 KNALMDGQSVSIEALNNKGLSP-IDRIKVGMKXEVXNLIDPYRYWIATV 588
N++ Q ++ ++ G +P + + KVGMK E + P + TV
Sbjct: 367 ANSVDAPQEFFVQ--DSTGTAPGLHQFKVGMKFEAIDPFSPSHIVVVTV 413
Score = 69.3 bits (162), Expect = 2e-12
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Frame = +1
Query: 250 YWIAEITMVCGHVLRIKFIGAE----SDFWCDISNTKVHPLGWCGKYDELIEPPDAINEK 417
+W+A + + H + +++ G E +DFW D+ + +HP+GWC K ++L+ PP AI E
Sbjct: 185 FWVATVKQLRQHRVLLRYEGYEDDDSADFWFDLRSMNIHPVGWCAKRNKLLIPPPAIREN 244
Query: 418 YGDKIIDIMKNALMDGQSVSIEALNNKGLSPIDRIKVGMKXEVXNLIDPYRYWIATV 588
D + L ++ S E L P +R + GMK EV + + Y +AT+
Sbjct: 245 C-TNWRDYLFKCLSGAKTFSAEFLQQLQDQPYNRFQKGMKVEVADRKNMYSMCVATI 300
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGHV 288
F W YL+ + + P LF + NG + M LE P + A +T V G +
Sbjct: 466 FSWPEYLDKTGGIEAPVHLFK--QERRMNGFRIGMKLEAVDLREPALVCPATVTDVKGPL 523
Query: 289 LRIKFIGAES--DFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYGDK 429
LRI F G + D D+ + + P+ +C ++PP + +KY +K
Sbjct: 524 LRIHFDGWDDSYDQLVDMDSLDIFPVSYCVSVGHPLQPPGPMPDKYVEK 572
Score = 30.7 bits (66), Expect = 0.94
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Frame = +1
Query: 115 WNNYL--ETSKSVAVPEELFSHVETSLYNGIKQ---NMLLEVCHRNNPDVYWIAEITMVC 279
WN +L + + SV P+E F T G+ Q M E +P I +T++
Sbjct: 358 WNEFLADDLANSVDAPQEFFVQDSTGTAPGLHQFKVGMKFEAIDPFSPS--HIVVVTVI- 414
Query: 280 GHVLRIKF--IGAES---DFWCDISNTKVHPLGWCGKYDELIEPP 399
VLR + +G +S F C ++ + P GW + PP
Sbjct: 415 -KVLRFNYFVLGVDSLATYFVCHANSRNIFPCGWARSQSLPLTPP 458
>SB_3663| Best HMM Match : MBT (HMM E-Value=0)
Length = 327
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +1
Query: 211 MLLEVCHRNNPDVYWIAEITMVCGHVLRIKFIG--AESDFWCDISNTKVHPLGWCGKYDE 384
M LEV D + + V G +R++F G A +D W + + ++HP GWC K
Sbjct: 1 MKLEVTDPRIVDTVCVGTVVGVLGSRIRVRFDGTDASNDVWHVVDSNEIHPCGWCEKNGG 60
Query: 385 LIEPP 399
+++PP
Sbjct: 61 MLQPP 65
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 193 NGIKQNMLLEVCHRNNPDVYWIAEITMVCGHVLRIKFIG-AESDFWCDISNTKVHPLGWC 369
N ++ M LE NP + +A + V G I F G SD+W + + P WC
Sbjct: 74 NFFQKGMKLEAPDPKNPALICVASVGDVQGDKSGIDFDGYLGSDYWARFDSRSISPARWC 133
Query: 370 GKYDELIEPPD 402
++PPD
Sbjct: 134 NFTGHPLQPPD 144
>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
Length = 629
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 376 YDELIEPPDAINEKYGDKIIDIMKNALMDGQSVSIEALNNKGLSPIDRIKVGMKXEVXNL 555
+D + + NE D ++ + A +DG S + KG+S + + KV ++ + NL
Sbjct: 31 HDLPVSAEEIKNETRRDPVLSQVLQAAIDGWSPRLSETFKKGIS-VFKEKVSLQTKGDNL 89
Query: 556 IDPYR 570
+ YR
Sbjct: 90 LPAYR 94
>SB_53199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 127 LETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCHRNNPDVY 252
L+TSK+++ + VETS YN I N+ +C N ++Y
Sbjct: 172 LKTSKALSPDTSSRNKVETSAYNRIDGNL---ICLLNGNEIY 210
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 200 SNRTCFLRSVTGTIQMYTG*QRSR 271
SNRTC+L + +Q + G +RSR
Sbjct: 567 SNRTCWLALTSNAVQSFEGDRRSR 590
>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 475 SIEALNNKGLSPIDRIKVGMK--XEVXNLIDPYRYWIATV 588
S LNN+GLSP+ +K G +V N + R WI +
Sbjct: 771 SFRHLNNRGLSPVLPVKSGSTSLLQVPNNAETPRTWIRPI 810
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,394,065
Number of Sequences: 59808
Number of extensions: 376976
Number of successful extensions: 1168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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