Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0593
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71266-10|CAA95838.3| 491|Caenorhabditis elegans Hypothetical p... 63 1e-10
DQ904352-1|ABI78934.1| 564|Caenorhabditis elegans malignant bra... 41 8e-04
AC024792-4|AAF60679.2| 544|Caenorhabditis elegans Hypothetical ... 41 8e-04
U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna synt... 29 1.9
AC006637-3|AAP40533.1| 156|Caenorhabditis elegans Hypothetical ... 29 2.5
AC006637-2|AAK85477.2| 160|Caenorhabditis elegans Hypothetical ... 29 2.5
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 4.4
AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical ... 28 5.9
U28971-3|AAK68670.1| 319|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical... 27 7.7
>Z71266-10|CAA95838.3| 491|Caenorhabditis elegans Hypothetical
protein R06C7.7 protein.
Length = 491
Score = 63.3 bits (147), Expect = 1e-10
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 20/166 (12%)
Frame = +1
Query: 115 WNNYL---ETSKSVAVPEELFSHVETSLYNG-IKQNMLLE-VCHR--NNPD---VYWIAE 264
W +YL E K+ +P E F+ T +N +K+ ++ E V H N D V W A
Sbjct: 24 WESYLHQFEKGKTSFIPVEAFNRNLTVNFNECVKEGVIFETVVHDYDKNCDSIQVRWFAR 83
Query: 265 ITMVCGHVLRIKFIGAESDFWCDISNTKVHPLGWCGKYDELIE-----PPDAINEKYGDK 429
I VCG+ + +FIGA++ FW +I + + L D ++ PP AINE+Y +
Sbjct: 84 IEKVCGYRVLAQFIGADTKFWLNILSDDMFGLANAAMSDPNMDKIVYAPPLAINEEYQND 143
Query: 430 IIDIMKNALMDGQSVSIEALN-----NKGLSPIDRIKVGMKXEVXN 552
+++ + N + DG+ V +L+ K L R KVG + E+ N
Sbjct: 144 MVNYVNNCI-DGEIVGQTSLSPKFDEGKALLSKHRFKVGQRLELLN 188
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Frame = +1
Query: 109 FDWNNYLETSKSVAVPEELFSHVETS-LYNGIKQNMLLEVCHRNNPDVYWIAEITMVCGH 285
F W+ YLE + +P +LF + + + K + LE A + V G
Sbjct: 387 FRWDEYLEKESAETLPLDLFKPMPSQERLDKFKVGLRLEAADMCENQFICPATVKSVHGR 446
Query: 286 VLRIKFIGAESDF--WCDISNTKVHPLGWCGKYDELIEPPDAIN 411
++ + F G + +F D+ + + P+GWC + +++PP N
Sbjct: 447 LINVNFDGWDEEFDELYDVDSHDILPIGWCEAHSYVLQPPKKYN 490
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 313 ESDFWCDISNTKVHPLGWCGKYDELIEPPD 402
E F I+NT + P+G+ KY+ + PPD
Sbjct: 352 EDSFPIHINNTFMFPVGYAEKYNLELVPPD 381
>DQ904352-1|ABI78934.1| 564|Caenorhabditis elegans malignant brain
tumor repeat protein1 protein.
Length = 564
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = +1
Query: 106 EFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQ-NMLLEVCHRNNPDVYWI--AEITMV 276
+F W YL+ ++ +P+E+ + + + + +LE +N + YWI A + V
Sbjct: 449 KFKWEGYLKEKQAEKIPDEMLRPLPSKERRHMFEFGRVLEAVGQN--ETYWISPASVEEV 506
Query: 277 CGHVLRIKFIGAESDF--WCDISNTKVHPLGWCGKYDELIEPP 399
G + I+F G +S+F D+ + + P GWC ++ + P
Sbjct: 507 HGRTVLIEFQGWDSEFSELYDMDSHDLLPAGWCEFFNFKLRHP 549
Score = 34.3 bits (75), Expect = 0.067
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 238 NPDVYWIAEITMVCGHVLRIKFIG 309
+P++ W E+T VCG + IKF+G
Sbjct: 121 SPEIRWFGEVTAVCGFYVAIKFVG 144
>AC024792-4|AAF60679.2| 544|Caenorhabditis elegans Hypothetical
protein Y48G1A.6 protein.
Length = 544
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Frame = +1
Query: 106 EFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQ-NMLLEVCHRNNPDVYWI--AEITMV 276
+F W YL+ ++ +P+E+ + + + + +LE +N + YWI A + V
Sbjct: 429 KFKWEGYLKEKQAEKIPDEMLRPLPSKERRHMFEFGRVLEAVGQN--ETYWISPASVEEV 486
Query: 277 CGHVLRIKFIGAESDF--WCDISNTKVHPLGWCGKYDELIEPP 399
G + I+F G +S+F D+ + + P GWC ++ + P
Sbjct: 487 HGRTVLIEFQGWDSEFSELYDMDSHDLLPAGWCEFFNFKLRHP 529
Score = 34.3 bits (75), Expect = 0.067
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 238 NPDVYWIAEITMVCGHVLRIKFIG 309
+P++ W E+T VCG + IKF+G
Sbjct: 121 SPEIRWFGEVTAVCGFYVAIKFVG 144
>U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna
synthetase protein 1 protein.
Length = 918
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +1
Query: 295 IKFIGAESDFWCDISNTKVHPLGWCGK-------YDELIEPPDAINEKYGDKIIDIMKNA 453
+K+ +D D+SN + L +C K YD+L E + I + D+++D A
Sbjct: 577 LKYDVLSTDIPIDVSNAAIEGLHFCNKIWNLAAYYDQLAEKCEVIKDVDSDRLVDEWIMA 636
Query: 454 LMDGQSVSIEALNNK 498
+ +++A NK
Sbjct: 637 RLSTTVSTVDAHMNK 651
>AC006637-3|AAP40533.1| 156|Caenorhabditis elegans Hypothetical
protein F41B4.2b protein.
Length = 156
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 339 GYITPE--ITLCSNELDPKDMTTYH 271
GY+ E TLCS+ +DPKD + +H
Sbjct: 52 GYVLSEPIFTLCSHMIDPKDNSKFH 76
>AC006637-2|AAK85477.2| 160|Caenorhabditis elegans Hypothetical
protein F41B4.2a protein.
Length = 160
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 339 GYITPE--ITLCSNELDPKDMTTYH 271
GY+ E TLCS+ +DPKD + +H
Sbjct: 56 GYVLSEPIFTLCSHMIDPKDNSKFH 80
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 337 SNTKVHPLGWCGKYDELIEPPDAI-NEKYGD-KIIDIMKNALMD-GQSVSIEALNNKGLS 507
SNTK+ P G G D ++ D I + GD K +K+AL+D G+ + + G+S
Sbjct: 293 SNTKLLPAGSGGTIDMDVQAADTITTARLGDTKFTQPVKDALLDSGREALLRRMEIYGVS 352
Query: 508 PIDRIK 525
+ ++
Sbjct: 353 LLSSVE 358
>AF125971-1|AAD14769.2| 469|Caenorhabditis elegans Hypothetical
protein Y4C6B.5 protein.
Length = 469
Score = 27.9 bits (59), Expect = 5.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +1
Query: 250 YWIAEITMVCGHVLRIKFIGAESDFW 327
Y+I+ +T++C ++ +GA +D+W
Sbjct: 68 YFISSLTLLCPSLVTTLLLGAATDYW 93
>U28971-3|AAK68670.1| 319|Caenorhabditis elegans Hypothetical
protein B0244.7 protein.
Length = 319
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 253 WIAEITMV--CGHVLRIKFIGAESDFWCDISN 342
W++ IT+ CG ++ FIG S F CD N
Sbjct: 173 WVSAITVAISCG-IVEAAFIGRNSPFSCDYGN 203
>AF067216-14|AAC17517.4| 729|Caenorhabditis elegans Hypothetical
protein C35E7.1 protein.
Length = 729
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 285 MTTYHRDLCYPVY-IWIVPVTDLKKHVLFDSIIEAGFHMRK*FFWHCNRFACLQIIVP 115
+ T D+ YP Y +W LKKHV F ++ + + + ++C + Q+ VP
Sbjct: 216 LLTVPEDILYPEYSVWS---ESLKKHVTFTAVWNGRSEIIEQYVYNCEQGQFEQVHVP 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,077,998
Number of Sequences: 27780
Number of extensions: 306175
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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