Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0593
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   1.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   7.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   7.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 112 DWNNYLETSKSVAVPEELFSHVETSLYNGIK 204
           D +N   TSK+  + ++L S  +TSL+ G K
Sbjct: 94  DRSNTSNTSKTFILSDKLESSDDTSLFRGPK 124


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +1

Query: 259 AEITMVCGHVLRIKFIGAESDFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYGDKIID 438
           +E+       +RI F  +   F+  +   K+ P   C  Y +LIE  DAI     + I  
Sbjct: 233 SELATRLAEAVRIHFTASRDAFY-GLPLWKLLPT--CA-YKQLIESEDAIYNIISEIIET 288

Query: 439 IMKNALMDGQSVSIEAL 489
            ++    D +  S+EA+
Sbjct: 289 TIQEKRDDAKDESVEAI 305


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 37  EHISIN-FNYNVIGFWF*SVLIMAE 108
           EH   N + Y V+G WF S+ I  E
Sbjct: 409 EHNGTNGYQYQVVGKWFNSLDIRTE 433


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 37  EHISIN-FNYNVIGFWF*SVLIMAE 108
           EH   N + Y V+G WF S+ I  E
Sbjct: 499 EHNGTNGYQYQVVGKWFNSLDIRTE 523


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 290 LGSSSLEQRVISGVIYPIQKFIL*DGVVNMMN 385
           + + SLE  VI G +  +++ +  D V+ MMN
Sbjct: 481 IANGSLEVDVIDGRVLSVKRELGNDTVIVMMN 512


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 591 AHSGYPISVWIDEIXHFXLH 532
           AHS YP ++ I    H   H
Sbjct: 449 AHSSYPAAIQIGHTPHHHPH 468


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 118 NNYLETSKSVAVPEELFSHVETSLYNG 198
           +N   TSK+  + E+L S   TSL+ G
Sbjct: 88  SNASNTSKTFILSEKLESSDGTSLFRG 114


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 173  MWKPASIMESNRTCFLRSVTGTIQMYT 253
            MW+    ME  +T  L +V   ++ YT
Sbjct: 1158 MWRSVDEMEVRKTSALTTVLTGLRKYT 1184


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 173  MWKPASIMESNRTCFLRSVTGTIQMYT 253
            MW+    ME  +T  L +V   ++ YT
Sbjct: 1154 MWRSVDEMEVRKTSALTTVLTGLRKYT 1180


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 428 LSPYFSFIASGGSINSSY 375
           +SPY   I SGGS  S Y
Sbjct: 379 ISPYGYPIGSGGSFPSLY 396


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 304 IGAESDFWCDISNTKVHPLGW 366
           +G   +  CD++ T   PL W
Sbjct: 324 VGDNVEIKCDVTGTPPPPLVW 344


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 185 ASIMESNRTCFLRSVTGTIQ 244
           A ++++ R C L+S+T  +Q
Sbjct: 150 AILIKNERICILKSITCALQ 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,856
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 21
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)