Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0593
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ... 28 4.1
At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1 ... 28 4.1
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 28 4.1
At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1 ... 27 7.2
At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1 ... 27 7.2
At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li... 27 9.5
At3g48425.1 68416.m05286 endonuclease/exonuclease/phosphatase fa... 27 9.5
At3g46280.1 68416.m05009 protein kinase-related contains similar... 27 9.5
At3g42450.1 68416.m04397 zinc knuckle (CCHC-type) family protein... 27 9.5
At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containi... 27 9.5
At1g72820.1 68414.m08419 mitochondrial substrate carrier family ... 27 9.5
At1g13880.1 68414.m01629 ELM2 domain-containing protein contains... 27 9.5
>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 551
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 283 HVLRIKFI-GAESDFWCDISNTKVHPLGW 366
H+L ++F A D+WCDI V P W
Sbjct: 440 HLLSLRFSENAIGDYWCDICEKIVDPHKW 468
>At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]; may be involved
in wax biosynthesis; contains a SUR2-type
hydroxylase/desaturase catalytic domain (PS50242)
Length = 493
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 409 LLHQG-AQSIHHIYHTILKDELLYWIYHTRNHS 314
LLH G + I++ +H L LY YH+ +HS
Sbjct: 128 LLHAGPVEFIYYWFHRALHHHFLYSRYHSHHHS 160
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 283 HVLRIKF--IGAESDFWCDISNTKVHPLGW 366
H+L + F D+WC+ TKV+P W
Sbjct: 546 HLLFLSFGDKNVSGDYWCEACETKVNPKEW 575
>At1g02190.2 68414.m00150 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 623
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 409 LLHQG-AQSIHHIYHTILKDELLYWIYHTRNHS 314
LLH G + +++ +H L LY YH+ +HS
Sbjct: 132 LLHAGPVEFLYYWFHRALHHHFLYSRYHSHHHS 164
>At1g02190.1 68414.m00149 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]
Length = 627
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 409 LLHQG-AQSIHHIYHTILKDELLYWIYHTRNHS 314
LLH G + +++ +H L LY YH+ +HS
Sbjct: 132 LLHAGPVEFLYYWFHRALHHHFLYSRYHSHHHS 164
>At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 217 LEVCHRNNPDVYWIAEITMVCGHVLRIKFIGAESDFWCDISNTKVHPLGW 366
L++ HRN+ +T+ CG A +WCDI T++ P W
Sbjct: 526 LKIRHRNDEH-----PLTLSCGET-------ANGKYWCDICETELDPSKW 563
>At3g48425.1 68416.m05286 endonuclease/exonuclease/phosphatase
family protein similar to SP|P51173|APEA_DICDI
DNA-(apurinic or apyrimidinic site) lyase (EC
4.2.99.18)(Class II
apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium
discoideum}; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 364
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +1
Query: 334 ISNTKVHPLGWCGKYDELIEPPDAINEKYGDKIIDIMKNALMDGQ-SVSIEALNNKGLSP 510
++ T PL WCG + E D + ++ A ++G + E G +P
Sbjct: 209 LNKTSDKPLIWCGDLNVSHEEIDVSHPEF-------FATAKLNGYVPPNKEDCGQPGFTP 261
Query: 511 IDRIKVGMKXEVXNLIDPYRY 573
+R + G + L+D YRY
Sbjct: 262 SERGRFGATIKEGRLVDAYRY 282
>At3g46280.1 68416.m05009 protein kinase-related contains similarity
to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 471
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 493 NKGLSPIDRIKVGMKXEVXNLIDPY-RYWIA 582
N+GL DRI G K + +DPY R W+A
Sbjct: 184 NEGLILHDRIAYGAKELISYPLDPYGRVWLA 214
>At3g42450.1 68416.m04397 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 253
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 388 IEPP--DAINEKYGDKIIDIMKNALMDGQSVSIEALNNKGLSPI 513
I PP + I K G+ ++D +KN L+ G+ L+ K L+ +
Sbjct: 102 IPPPLMEIIVSKVGEDVVDALKNFLLAGREGRDAVLSKKTLASV 145
>At3g22670.1 68416.m02861 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 562
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +1
Query: 331 DISNTKVHPLGWCGKYDELIEPPDAINEKYGDKIIDIMKNALMDG--QSVSIEALNNKGL 504
D + + L GKY++ ++ + + YG K I N+LMD + SIE + L
Sbjct: 204 DTMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFL 263
Query: 505 SPIDRIK 525
D IK
Sbjct: 264 KLFDTIK 270
>At1g72820.1 68414.m08419 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 349
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 103 AEFDWNNYLETSKSVAVPEELFSHVETSLYNGIKQNMLLEVCH 231
A+ +W L+ SK + LFS V +LY + +VCH
Sbjct: 18 ADINWE-MLDKSKFFVLGAALFSGVSGALYPAVLMKTRQQVCH 59
>At1g13880.1 68414.m01629 ELM2 domain-containing protein contains
Pfam profile: PF01448 ELM2 domain
Length = 424
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 307 GAESDFWCDISNTKVHPLGWCGKYDELIEPPDAINEKYGDK 429
G E +WC IS K P+G D + P+ + E+ D+
Sbjct: 113 GEEDGYWCPISPRKTVPIG----SDYQADIPECVKEEANDQ 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,232,704
Number of Sequences: 28952
Number of extensions: 278768
Number of successful extensions: 790
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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