Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0591
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    28   0.064
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   1.4  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   4.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   4.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   4.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   7.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.7  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   9.7  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 0.064
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
 Frame = +2

Query: 326 FFESQPDISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPXEWLQSRD 505
           + + Q  +S+G T      T A+A Y       A    WSP+     T+E+   W  S  
Sbjct: 188 YIKPQLHVSTGSTSSP---TIASATYTNS----ANSSIWSPASIDSFTLEQHRSWCSSSQ 240

Query: 506 FYSSDNTLPTSGSDN-----NISY-------HSEYGSGRYTGFGNSPKQS 619
              S     T+  +N     N+ Y       HS++G+G  T +G S  +S
Sbjct: 241 PVLSTTNSTTNCYNNYPYYSNMDYLSSSTMSHSQFGNGLETSWGKSRDES 290


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -3

Query: 206 STPSISRLRTSLTPIEDSEFRTQSI---YGSRRGCGLSSTCVWYVVMPFYLLVKV 51
           S  S  RL   +  +E+ E   ++I   YG      L S  +  VV P+YLL++V
Sbjct: 239 SALSYERLNEFMRLVEEIEDVIEAINGFYGVHTLLILFSCLLHLVVTPYYLLIEV 293


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 159 GFRVPHSKHLW 127
           GFRV  +KH+W
Sbjct: 199 GFRVDAAKHMW 209


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 159 GFRVPHSKHLW 127
           GFRV  +KH+W
Sbjct: 200 GFRVDAAKHMW 210


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 159 GFRVPHSKHLW 127
           GFRV  +KH+W
Sbjct: 200 GFRVDAAKHMW 210


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 548 NNISYHSEYGSGRYTGFGNSPKQSHSTSDVADAQRETKVVDN 673
           NN++ ++   +GR+T    +   S   SD A   R  + VD+
Sbjct: 159 NNLNKNNVVATGRFTFHKKNLYYSFYISDKAARPRSLQFVDS 200


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 426  AKAAIFWRYIAAALVLYFCGIVIPELMS 343
            +K  I W  +   + L+ CG  + E  S
Sbjct: 1119 SKIRICWNVLLNCVYLFLCGFCVYEFAS 1146



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 405 RYIAAALVLYFCGIVI 358
           RY+A ALV+ F  I++
Sbjct: 140 RYVALALVILFSEILV 155


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 240 HSFVPSLWTSGRTWNLRK*WSEATRRPASSSRV 338
           H+++  LW   +TW     W+    R A + ++
Sbjct: 463 HAWIWLLWLLSQTWITLHIWTPKCERLARTEKL 495


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 240 HSFVPSLWTSGRTWNLRK*WSEATRRPASSSRV 338
           H+++  LW   +TW     W+    R A + ++
Sbjct: 463 HAWIWLLWLLSQTWITLHIWTPKCERLARTEKL 495


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 240 HSFVPSLWTSGRTWNLRK*WSEATRRPASSSRV 338
           H+++  LW   +TW     W+    R A + ++
Sbjct: 463 HAWIWLLWLLSQTWITLHIWTPKCERLARTEKL 495


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = +3

Query: 240 HSFVPSLWTSGRTWNLRK*WSEATRRPASSSRV 338
           H+++  LW   +TW     W+    R A + ++
Sbjct: 463 HAWIWLLWLLSQTWITLHIWTPKCERLARTEKL 495


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 107 LSSTCVWYVVMPFYLLVKVGSLF 39
           L +  VW+V  P Y L K+  +F
Sbjct: 17  LKALTVWHVENPTYRLYKIFVVF 39


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 380 NTKAAAMYRQKIAALAEGRPWSPSDYKPE 466
           +T  A    Q ++  + G P SP D KP+
Sbjct: 3   STDRALSLDQNLSMGSLGAPQSPLDMKPD 31


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 405 RYIAAALVLYFCGIVI 358
           RY+A ALV+ F  I++
Sbjct: 158 RYVALALVILFSEILV 173


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,600
Number of Sequences: 336
Number of extensions: 3728
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)