Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0591
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 137 1e-33
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 107 1e-24
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 80 3e-16
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 78 1e-15
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 68 1e-12
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 59 5e-10
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 30 0.28
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 27 2.0
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 27 2.6
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 3.4
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 4.5
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 26 4.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.9
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 7.9
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 137 bits (332), Expect = 1e-33
Identities = 75/193 (38%), Positives = 107/193 (55%), Gaps = 14/193 (7%)
Frame = +2
Query: 95 KLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWK 274
KL+ + L EN KCF+C NPQW S G++ICL+CSG HR LGV SFVRS+TMD W
Sbjct: 4 KLDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWS 63
Query: 275 DVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSD 454
+ +++ M VGGN+ A+ F + P S+ +I +KYNT A RQKI A +G W D
Sbjct: 64 ERQVKMMEVGGNSNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKIRAEVDGVEWVKVD 123
Query: 455 YKPETIEKPXEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGS--------------GRYT 592
+P+++ S S+ T+P+ + N Y ++ GS GRY
Sbjct: 124 -RPKSVSSHASVTSS----STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQ 178
Query: 593 GFGNSPKQSHSTS 631
GFG+S + ++S
Sbjct: 179 GFGSSNSVNPNSS 191
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 107 bits (258), Expect = 1e-24
Identities = 48/119 (40%), Positives = 74/119 (62%), Gaps = 5/119 (4%)
Frame = +2
Query: 86 TKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFV---RSV 256
+++ L S+R+ +N CF+CG NP W S T+G+++CL+CS HR++GVH+SFV RS
Sbjct: 8 SQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRST 67
Query: 257 TMDKWKDVELEKMMVGGNAKAREFFESQPDIS--SGMTIPQKYNTKAAAMYRQKIAALA 427
+D W +L M VGGN AR +F+ +S + KY++K A Y +K+ +LA
Sbjct: 68 VLDSWTYAQLRVMRVGGNENARNYFKRHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 80.2 bits (189), Expect = 3e-16
Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Frame = +2
Query: 98 LNSIRNLDENHKCFECG-TLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWK 274
L S+ N C +C P+W S GV+IC+ CSGVHRSLGVH+S V+SV +D W
Sbjct: 16 LKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSWT 75
Query: 275 DVELEKMMVGGNAKAREFFESQPDISSG-MTIPQKYNTKAAAMYRQKIAALAEGRPWSPS 451
D + E M GN +A ++E++ ++ G + K T Y K L P SP
Sbjct: 76 DEQTENMTRWGNERANLYWEAK--LAGGHVPSDSKIATFIKTKYEFKKWVLYPEIP-SPE 132
Query: 452 DYKPETIEKP 481
KPE +P
Sbjct: 133 TLKPEQNTRP 142
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 77.8 bits (183), Expect = 1e-15
Identities = 28/79 (35%), Positives = 50/79 (63%)
Frame = +2
Query: 107 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 286
++++ N+ C +C T QW S G+++CL C+ +HR LG H+S V+S+++D+W + ++
Sbjct: 14 VQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQI 73
Query: 287 EKMMVGGNAKAREFFESQP 343
EKM GN A ++ P
Sbjct: 74 EKMKHWGNINANRYWNPNP 92
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 67.7 bits (158), Expect = 1e-12
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = +2
Query: 77 SPRTKRKLNSIRNLDENHKCFECGTL-NPQWVSVTYGVWICLECSGVHRSLGVHLSFVRS 253
SP + L + + D++ C +C T +W ++ + V +C++CSG+HRSLG H++ +RS
Sbjct: 669 SPSLVKTLKEMHSSDQS--CADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRS 726
Query: 254 VTMDKWKDVELEKMMVGGNAKAREFFE 334
+T+DK+ ++ + GN+ E +E
Sbjct: 727 LTLDKFNPETVDLLYATGNSFVNEIYE 753
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 59.3 bits (137), Expect = 5e-10
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +2
Query: 98 LNSIRNLD-ENHKCFECGTLNP-QWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 271
+ +R D N C +CG++ W S+ V +C+ECSG+HRSLG H+S RS+ +D
Sbjct: 717 IQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSL 776
Query: 272 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQ-KYNTKAAAMYRQK 412
+ GNA +E +S+ P+ ++N + + QK
Sbjct: 777 SQQSKVLLCKIGNAAVNRVYEK--GLSNPSLKPKPEHNAQVKLAFAQK 822
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 497 SRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQSHSTSDVADAQRETKVVDNT 676
S F + NT TSGSD+++ S S YT +S S ST+ A ++ + N
Sbjct: 969 SSGFQTVSNTTATSGSDDDVKTASTSSSTSYT---SSSSSSSSTTSAASSKASVSMGLNG 1025
Query: 677 LATLA 691
L A
Sbjct: 1026 LMIAA 1030
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 680 RACCRRPSFPAVHRRHRKSSAIALGS 603
R C P FP V HR S AL S
Sbjct: 5 RLCAATPRFPLVSLAHRNSKVFALAS 30
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 172 SDVRSLDMLGVLGRASKPRCSPVIRSFRH 258
SD RS D LGV+GR + ++++RH
Sbjct: 215 SDTRSSDDLGVIGRQFQQDFLAYLKNYRH 243
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/91 (25%), Positives = 34/91 (37%)
Frame = +2
Query: 347 ISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPXEWLQSRDFYSSDNT 526
+ SG T+ KY + Y Q I WS K L + Y + +
Sbjct: 308 VYSGSTVSPKYTIQ---QYVQSIGTPTMQPYWSLGFQMSRWGYKTLSDLINMRSYLNASN 364
Query: 527 LPTSGSDNNISYHSEYGSGRYTGFGNSPKQS 619
+PT G N+I Y SE+ + P Q+
Sbjct: 365 IPTEGFWNDIDYMSEFRTFTVNSTAFPPNQT 395
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 425 LKPRSFGGTSQRPWYCTSVV*SSQN*CPVDSRRTRGPSRCL 303
L R G++ P YC + S N C +D+R G +R L
Sbjct: 418 LSCRCSDGSTMLPAYCPIIPSSEVNFCSIDNRIIAGMNRDL 458
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 443 SPSDYKPETIEKPXEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPK-QS 619
+P D+ E +LQ R+F+ + L TS S N+ S + + S K +S
Sbjct: 607 APEDFPIMPAESIHLFLQPRNFFKHNPALDTSSSVNSTSEATSPNTHHENLRDTSQKRES 666
Query: 620 HST 628
HST
Sbjct: 667 HST 669
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 485 EWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQSHSTSDVAD 643
E QS DF +N D + + SGR + +SP S S+S ++
Sbjct: 201 ECSQSEDFAEDENLYDELNLDEASASYDAERSGRSSSSSHSPSPSASSSSSSE 253
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 275 DVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAA 397
D E EK++ G A EF+ +QP + G + Y+ AAA
Sbjct: 182 DEEFEKLVASGKADESEFY-AQPFVEEG---EKDYDEAAAA 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,476
Number of Sequences: 5004
Number of extensions: 63908
Number of successful extensions: 225
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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