Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0591
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   8e-15
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   3e-14
SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                54   1e-07
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_53368| Best HMM Match : CLN3 (HMM E-Value=1.4e-07)                  32   0.39 
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  29   3.6  
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)                    29   3.6  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_38319| Best HMM Match : KOW (HMM E-Value=1.9)                       28   8.4  
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)                  28   8.4  
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 29/65 (44%), Positives = 45/65 (69%)
 Frame = +2

Query: 125 NHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVELEKMMVG 304
           N+ C +CG  +P+W S + G++IC+ CSGVHR+LG  +S V+S+ +D W D  L+ M+  
Sbjct: 17  NNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSLRLDTWTDERLQFMIEN 76

Query: 305 GNAKA 319
           GN K+
Sbjct: 77  GNEKS 81


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 37/106 (34%), Positives = 55/106 (51%)
 Frame = +2

Query: 98  LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKD 277
           +  ++ L  N  C +C + +P W+S   GV  C+ECSGVHR +GVH+S V+S+T+D    
Sbjct: 89  VKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQSITLDNIGT 148

Query: 278 VELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKI 415
            EL      GN    E  E+  DI    T   K + K   ++ + I
Sbjct: 149 AELLLAKAIGNGGFNEIMEATLDIDQKPTANSKMDEKKEFIHAKYI 194


>SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = +2

Query: 290 KMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKI 415
           +M+VGGN KA+ FF SQPDI  G ++  KYN+KAAA+YR K+
Sbjct: 83  QMIVGGNDKAKAFFSSQPDIHQGQSLHDKYNSKAAALYRDKV 124


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/81 (30%), Positives = 42/81 (51%)
 Frame = +2

Query: 68  KMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFV 247
           K    +  + L  + +   N KCF+CG   P +V++T G ++C  CSG+ R L      V
Sbjct: 6   KKQDEKNLKILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPP-QRV 64

Query: 248 RSVTMDKWKDVELEKMMVGGN 310
           +S++M  +   E+E +   GN
Sbjct: 65  KSISMTSFTPQEIEYLQGAGN 85


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +2

Query: 218 RSLGVHLSFVRSVTMDKWKDVELEKMMVGGNAKAREFFESQ 340
           RSLGVH+S VRS+T+D W+   L+ M   GN+     +E++
Sbjct: 299 RSLGVHVSKVRSLTLDAWEPEHLKLMSELGNSLINSIYEAK 339


>SB_53368| Best HMM Match : CLN3 (HMM E-Value=1.4e-07)
          Length = 419

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -1

Query: 610 WGVTEAGVAAASILAVVANVVIRSACRQRVV 518
           WG+T AG+ AASI+ + A  V +S C+Q ++
Sbjct: 370 WGIT-AGIIAASIVGLFAEPVFKSHCQQEML 399


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 TLNPQWVSVTYGVWICLECSGVH 217
           ++ P   S+TYG W+C  CS  H
Sbjct: 919 SIGPGPASITYGAWVCESCSNGH 941


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 380  NTKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPXEWLQSRDFYSSDNTLPTSGSDNNIS 559
            NTK        I A++ G   SPS  +P+  ++  + + S    S +++ PT  S    S
Sbjct: 2050 NTKEDDEITGLINAISSGDKTSPSTTRPQLNKRDTDAVLSSLLGSINSSKPTLDSSWASS 2109

Query: 560  YHSEYGSGRYTGFG-NSPKQSHSTSD 634
              S+    R  GFG +  +  +ST+D
Sbjct: 2110 AGSDQEGARKGGFGLDEDRPGYSTAD 2135


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +2

Query: 326 FFESQPDISS-GMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPXEWLQSR 502
           ++ SQ   ++  +T P+K   K   + + +  +L E RP+ P D + + +EK  E  +  
Sbjct: 105 YYSSQTTTAACHLTSPRKNMLKFLTL-KFRNQSLNEVRPFEPQDTEIQNVEKGDE--EDE 161

Query: 503 DFYSSDNTLPTSGSDNNISYHSEYGSGRYT 592
           +  S ++ + T+ ++NN     +  S + T
Sbjct: 162 EILSINDEVSTNNNNNNEESAEDLDSTKQT 191


>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
          Length = 1225

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 692 KRESRACCRRPSFPAVHRRHRKSSAIALGSYRSRCSGR 579
           +R++RAC      P  +  H+   A  L SYRS CSGR
Sbjct: 762 RRDARACA-----PKAYT-HQSRKATLLASYRSACSGR 793


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 692  KRESRACCRRPSFPAVHRRHRKSSAIALGSYRSRCSGR 579
            +R++RAC      P  H  H+   A    SYRS CSGR
Sbjct: 1565 RRDARACA-----PKAHT-HQSRKATQPASYRSACSGR 1596


>SB_22785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 215 ARPSTPSISRLR--TSLTPIEDSEFRTQSIYGSRRGCGLSSTCV 90
           +RP   S+++ +   +LT I + ++ T+S  G  R CGLS+ CV
Sbjct: 89  SRPRGLSVAKFKMAVNLTAILNLDYSTESTRG--RSCGLSAQCV 130


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 534 QADLITTLATTASMEAAATPASVTPQSNRTRLPMSPMHSG 653
           QAD++ T+++  +   +AT  SVT Q+  +++  SP H G
Sbjct: 533 QADVVMTISSDEAKIVSATSDSVTAQNTSSKI--SPRHPG 570


>SB_38319| Best HMM Match : KOW (HMM E-Value=1.9)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 573 MEAAATPASVTPQSNRTRLPMSPMHSGK 656
           M+A A P S T +  +   P  P HSGK
Sbjct: 173 MQAKAKPTSSTDEPKKDSAPKVPAHSGK 200


>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
          Length = 1083

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 503  DFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQSHSTSDVADAQRETKVVDNTLA 682
            +F   ++ LP   SD+N+S  ++ G  R  G+G     S   +  AD  ++  +    +A
Sbjct: 945  EFRKKESLLPDD-SDSNVSAPTQNGPTRIGGYGREKSASVDETGSADESKQNSLAHFMMA 1003


>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 527 LPTSGSDNNISYHSE--YGSGRYTGFGNSPKQSHSTSDVADAQRETK 661
           +P+  + +NI  H    YG G++  + N  +Q H  SD++    +T+
Sbjct: 23  IPSGFNRDNIWQHLVFMYGHGKFKLYKNKVEQGHKDSDISSGSFDTQ 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,241,264
Number of Sequences: 59808
Number of extensions: 515422
Number of successful extensions: 1717
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)