Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0591
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 149 1e-36
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 140 6e-34
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 118 5e-27
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 115 3e-26
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 114 5e-26
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 114 5e-26
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 99 3e-21
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 95 5e-20
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 95 5e-20
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 95 5e-20
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 95 5e-20
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 91 5e-19
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 90 1e-18
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 90 1e-18
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 78 6e-15
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 75 6e-14
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 74 1e-13
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 71 6e-13
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 70 1e-12
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 70 1e-12
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 64 1e-10
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 64 1e-10
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 30 1.3
At5g66640.1 68418.m08399 LIM domain-containing protein-related c... 30 1.7
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 29 2.2
At5g66470.1 68418.m08382 expressed protein 29 3.9
At4g01810.1 68417.m00238 protein transport protein-related relat... 29 3.9
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi... 29 3.9
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 28 5.2
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 28 5.2
At2g17220.2 68415.m01989 protein kinase, putative similar to pro... 28 6.8
At5g23700.1 68418.m02778 hypothetical protein 27 9.0
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 27 9.0
At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containi... 27 9.0
At4g15056.1 68417.m02313 hypothetical protein 27 9.0
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 149 bits (362), Expect = 1e-36
Identities = 71/160 (44%), Positives = 101/160 (63%)
Frame = +2
Query: 92 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 271
R+L ++++ EN C +C NPQW SV+YG+++CLECSG HR LGVH+SFVRSVTMD W
Sbjct: 5 RQLRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSW 64
Query: 272 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPS 451
++++KM GGN + +FF +Q I+ I KYN+ AA++YR +I ALAEGRPW+
Sbjct: 65 SAIQIKKMEAGGNERLNKFF-AQYGIAKETDIISKYNSNAASVYRDRIQALAEGRPWNDP 123
Query: 452 DYKPETIEKPXEWLQSRDFYSSDNTLPTSGSDNNISYHSE 571
E +KP +++N DN+ SY S+
Sbjct: 124 PVVKEANKKPPLAQGGYGNNNNNNNGGWDSWDNDDSYKSD 163
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 140 bits (340), Expect = 6e-34
Identities = 61/127 (48%), Positives = 86/127 (67%)
Frame = +2
Query: 92 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 271
R+L ++++ EN C +C NPQW S++YG+++CLECSG HR LGVH+SFVRSVTMD W
Sbjct: 5 RRLRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSW 64
Query: 272 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPS 451
+++++KM GGN + F +Q IS I KYN+ AA++YR +I ALAEGR W
Sbjct: 65 SEIQIKKMDAGGNERLNNFL-AQYGISKETDIISKYNSNAASVYRDRIQALAEGRQWRDP 123
Query: 452 DYKPETI 472
E++
Sbjct: 124 PIVKESV 130
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 118 bits (283), Expect = 5e-27
Identities = 51/104 (49%), Positives = 70/104 (67%)
Frame = +2
Query: 107 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 286
+++ EN CF+C NP W SV YG+++C++CS VHRSLGVH+SFVRS +D W +L
Sbjct: 16 LKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQL 75
Query: 287 EKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIA 418
MM GGN +A+ FF+ Q + G I KY ++AA MYRQ +A
Sbjct: 76 RTMMFGGNNRAQVFFK-QHGWNDGGKIEAKYTSRAADMYRQTLA 118
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 115 bits (277), Expect = 3e-26
Identities = 49/104 (47%), Positives = 70/104 (67%)
Frame = +2
Query: 107 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 286
+++ EN CF+C NP W SVTYG+++C++CS HR+LGVH+SFVRS +D W +L
Sbjct: 19 LKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQL 78
Query: 287 EKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIA 418
MM GGN +A+ FF+ Q + G I KY ++AA +YRQ +A
Sbjct: 79 RTMMFGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAADLYRQILA 121
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 114 bits (275), Expect = 5e-26
Identities = 53/119 (44%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Frame = +2
Query: 71 MASPRTKRKLNSIRNL---DENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLS 241
MAS K++ + L +N CF+C NP W SVTYG+++C++CS VHRSLGVH+S
Sbjct: 1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
Query: 242 FVRSVTMDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIA 418
FVRS +D W +L+ M+ GGN +A+ FF+ Q S G KY ++AA +Y+Q +A
Sbjct: 61 FVRSTNLDSWSSEQLKMMIYGGNNRAQVFFK-QYGWSDGGKTEAKYTSRAADLYKQILA 118
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 114 bits (275), Expect = 5e-26
Identities = 53/119 (44%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Frame = +2
Query: 71 MASPRTKRKLNSIRNL---DENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLS 241
MAS K++ + L +N CF+C NP W SVTYG+++C++CS VHRSLGVH+S
Sbjct: 1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
Query: 242 FVRSVTMDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIA 418
FVRS +D W +L+ M+ GGN +A+ FF+ Q S G KY ++AA +Y+Q +A
Sbjct: 61 FVRSTNLDSWSSEQLKMMIYGGNNRAQVFFK-QYGWSDGGKTEAKYTSRAADLYKQILA 118
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Frame = +2
Query: 89 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 268
KR++ + N +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDE 74
Query: 269 WKDVELEKMM-VGGNAKAREFFES-QPDISS 355
W D E++ M+ +GGNA A +E+ PD S
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFLPDTCS 105
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 89 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 268
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 269 WKDVELEKMM-VGGNAKAREFFES 337
W D E++ M+ +GGNA A +E+
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEA 98
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 89 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 268
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 269 WKDVELEKMM-VGGNAKAREFFES 337
W D E++ M+ +GGNA A +E+
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEA 98
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 89 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 268
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 269 WKDVELEKMM-VGGNAKAREFFES 337
W D E++ M+ +GGNA A +E+
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEA 98
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 94.7 bits (225), Expect = 5e-20
Identities = 39/84 (46%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Frame = +2
Query: 89 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 268
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 269 WKDVELEKMM-VGGNAKAREFFES 337
W D E++ M+ +GGNA A +E+
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEA 98
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 91.5 bits (217), Expect = 5e-19
Identities = 37/93 (39%), Positives = 61/93 (65%)
Frame = +2
Query: 62 IDKMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLS 241
+ K + + + L ++ +N +C +C + P+W SV G++IC++CSG+HRSLGVH+S
Sbjct: 7 VSKELNAKHSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHIS 66
Query: 242 FVRSVTMDKWKDVELEKMMVGGNAKAREFFESQ 340
VRS+T+D W ++ M GNAK E++ES+
Sbjct: 67 QVRSITLDTWLPDQVAFMKSTGNAKGNEYWESE 99
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 90.2 bits (214), Expect = 1e-18
Identities = 37/93 (39%), Positives = 59/93 (63%)
Frame = +2
Query: 62 IDKMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLS 241
+ K + R ++ L + EN +C +C T P+W SV G++IC++CSG+HRSLGVH+S
Sbjct: 7 VSKELNARHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHIS 66
Query: 242 FVRSVTMDKWKDVELEKMMVGGNAKAREFFESQ 340
VRS T+D W ++ + GN KA ++E++
Sbjct: 67 KVRSATLDTWLPEQVAFIQSMGNDKANSYWEAE 99
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 90.2 bits (214), Expect = 1e-18
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 2/200 (1%)
Frame = +2
Query: 50 PLSLIDKMASPRTKR-KLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSL 226
PL + D S R +L + N C +CG+ P+WVS++ GV+IC++CSGVHRSL
Sbjct: 33 PLRVEDLQTSSSDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSL 92
Query: 227 GVHLSFVRSVTMDKWKDVELEKMM-VGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMY 403
GVH+S V SV +D+W D +++ ++ GGN E FE+ S P N +
Sbjct: 93 GVHISKVLSVKLDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFI 152
Query: 404 RQKIAALAEGRPWSPSDYKPETIEKPXEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSG 583
R+K + + P D T ++P S S + T N I + G
Sbjct: 153 RKK---YEQHQFMDPKDGALCTYQQPSRTNTSPPSLCSASHRSTK---NRIGHAFRNSWG 206
Query: 584 RYTGFGNSPKQSHSTSDVAD 643
R PK+S+S + + +
Sbjct: 207 RRESDHKGPKKSNSMAGMVE 226
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 77.8 bits (183), Expect = 6e-15
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = +2
Query: 89 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD- 265
++ ++++R + N KC +CG P W S+ GV +C+ECSGVHR+LGVH+S VRS+T+D
Sbjct: 442 EKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 501
Query: 266 -KWKDVELEKMMVGGNAKAREFFE 334
W+ + GN A +E
Sbjct: 502 KVWEPSVISLFQALGNTFANTVWE 525
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 74.5 bits (175), Expect = 6e-14
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Frame = +2
Query: 83 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 262
+T++ ++ + + N +C +CG P W S+ GV IC+ECSG+HR+LGVH+S VRS+T+
Sbjct: 518 KTEKPIDVLTRVLGNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLTL 577
Query: 263 D--KWKDVELEKMMVGGNAKAREFFE 334
D W+ L GN +E
Sbjct: 578 DVKVWEPSVLTLFQSLGNVYVNSVWE 603
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 98 LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD--KW 271
L +R + N+ C EC +P W S+ GV +C+ECSGVHR+LGVH+S VRS+T+D W
Sbjct: 470 LTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLTLDVKVW 529
Query: 272 KDVELEKMMVGGNAKAREFFE 334
+ L+ GN +E
Sbjct: 530 EPTILDLFRNLGNGYCNSVWE 550
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 71.3 bits (167), Expect = 6e-13
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Frame = +2
Query: 107 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD--KWKDV 280
+R L N+ C EC P W S+ GV +C++CSGVHR+LGVH+S VRS+++D W+
Sbjct: 473 LRGLPGNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPT 532
Query: 281 ELEKMMVGGNAKAREFFE 334
L+ GN +E
Sbjct: 533 ILDLFRNLGNVYCNSLWE 550
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 68 KMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFV 247
K R ++ + + L N +C C +L PQ+V T+ ++C+ CSG+HR H V
Sbjct: 5 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-THR--V 61
Query: 248 RSVTMDKWKDVELEKMMVGGNAKAREFF 331
+SV+M K+ E+E + GGN +ARE +
Sbjct: 62 KSVSMSKFTSKEVEVLQNGGNQRAREIY 89
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 70.1 bits (164), Expect = 1e-12
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 68 KMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFV 247
K R ++ + + L N +C C +L PQ+V T+ ++C+ CSG+HR H V
Sbjct: 5 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-THR--V 61
Query: 248 RSVTMDKWKDVELEKMMVGGNAKAREFF 331
+SV+M K+ E+E + GGN +ARE +
Sbjct: 62 KSVSMSKFTSKEVEVLQNGGNQRAREIY 89
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/83 (32%), Positives = 48/83 (57%)
Frame = +2
Query: 83 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 262
+ ++ + S+ L EN +C C +L PQ+V T+ ++C CSG+HR H V+S++M
Sbjct: 10 KNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-THR--VKSISM 66
Query: 263 DKWKDVELEKMMVGGNAKAREFF 331
K+ E+ + GGN A++ +
Sbjct: 67 AKFTSQEVTALKEGGNQHAKDIY 89
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/83 (32%), Positives = 48/83 (57%)
Frame = +2
Query: 83 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 262
+ ++ + S+ L EN +C C +L PQ+V T+ ++C CSG+HR H V+S++M
Sbjct: 10 KNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-THR--VKSISM 66
Query: 263 DKWKDVELEKMMVGGNAKAREFF 331
K+ E+ + GGN A++ +
Sbjct: 67 AKFTSQEVTALKEGGNQHAKDIY 89
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 107 IRNLDENHKCFECGTLNPQ---WVSVTYGVWICLEC 205
+ D KC C L P+ +V + G W+CLEC
Sbjct: 369 VHEADGTPKCCSCERLEPRESNYVMLADGRWLCLEC 404
>At5g66640.1 68418.m08399 LIM domain-containing protein-related
contains low similarity to Pfam profile PF00412: LIM
domain
Length = 450
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 80 PRTKRKLNSIRNLDENHKCFECGTLNPQWVS-VTYGV--WICLECSG 211
P K K I + D KC C L P+ + V G W+C+EC G
Sbjct: 152 PFWKEKYCPIHDEDGTAKCCSCERLEPRGTNYVMLGDFRWLCIECMG 198
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/65 (21%), Positives = 26/65 (40%)
Frame = +2
Query: 347 ISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETIEKPXEWLQSRDFYSSDNT 526
ISS + + ++ ++ R + GR +P WL++ + +N
Sbjct: 102 ISSSVPLTSEFGSRKRGRGRGRGRGRGRGRGQGQGSREPNNNNNDNNWLKNPQMFEFNNN 161
Query: 527 LPTSG 541
PTSG
Sbjct: 162 TPTSG 166
>At5g66470.1 68418.m08382 expressed protein
Length = 427
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +2
Query: 302 GGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETIEK- 478
G AK E++E D+ + + KY + ++ L G P+ P D E E+
Sbjct: 256 GEIAKKLEWYEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERF 315
Query: 479 -PXEWLQSRDFYSSDNTLPTSGSDNNISY 562
E ++ + F N +P + N +SY
Sbjct: 316 FVSEIVREKIFMQYRNEVPYACQVNVLSY 344
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 128 HKCFECGTLNPQWVSVTY--GVWICLECSGVHRSLGVHLS 241
H+C CG + + S+ G W C+ C ++ S G +++
Sbjct: 202 HRCLNCGAYSNPYSSILIGSGQWQCVICENMNGSKGEYVA 241
>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 839
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 407 QKIAALAEGRPWSPSDYKPETIEKPXEWLQSRDFY-SSDNTLPTSGSDNNISYHSEYGSG 583
+K + EG P++ + + S FY ++ +TLP S SDN+ +H+ Y G
Sbjct: 723 KKETVINEGSAQKPNNQRTRAVRTSNG---SYMFYPAAASTLPISDSDNHRHHHAGYHHG 779
Query: 584 RYTGFG 601
+ G G
Sbjct: 780 GHHGGG 785
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +2
Query: 107 IRNLDENHKCFECGTLNPQ---WVSVTYGVWICLEC 205
+ D KC C L P+ + ++ G W+CLEC
Sbjct: 430 VHEADGTPKCCSCERLEPRGTKYGKLSDGRWLCLEC 465
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +2
Query: 2 RAEFGTRLVKSF*KDFPLSLIDKMASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTY 181
R F +R +S +D PL D A P+ +N RN + +C E P V
Sbjct: 281 RVAFKSRNDESSQRDRPLYSAD-WACPKCDF-VNFARN-ERCRECNEVADRRPVAAVVKE 337
Query: 182 GVWICLECS 208
G W+C ECS
Sbjct: 338 GDWLCPECS 346
>At2g17220.2 68415.m01989 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 413
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 431 GRPW-SPSDYKPETIEKPXEWLQSRDFYSSDNTLPTSGS-DNNISYHSEY 574
G W SPSD P T + S F SS+NT T S +NIS +S +
Sbjct: 2 GLCWGSPSDSPPTTTPSSTGNISSGTFKSSNNTTTTGTSRGSNISSNSGF 51
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 287 EKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKIAAL 424
E+M A+ARE + + G+++ K ++ A RQ+ AAL
Sbjct: 213 EEMREAAEARARELEKQVASLGEGVSLEAKLLSRKEAALRQREAAL 258
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 119 DENHKCFECGTLNPQWVSVTYGVWICLECS 208
D+ + F L P V V G W+C++CS
Sbjct: 83 DKCDRGFHMKCLRPIVVRVPIGTWLCVDCS 112
>At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 729
Score = 27.5 bits (58), Expect = 9.0
Identities = 25/103 (24%), Positives = 46/103 (44%)
Frame = +2
Query: 164 WVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVELEKMMVGGNAKAREFFESQP 343
WV + +GV+ + SGV G+++ + + KD ++EK VG + P
Sbjct: 215 WVELAWGVYQEISRSGV----GINVYTLNIMVNALCKDGKMEK--VGTFLSQVQEKGVYP 268
Query: 344 DISSGMTIPQKYNTKAAAMYRQKIAALAEGRPWSPSDYKPETI 472
DI + T+ Y++K ++ G+ +SP Y T+
Sbjct: 269 DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTV 311
>At4g15056.1 68417.m02313 hypothetical protein
Length = 225
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 185 VWICLECSGVHRSLGVHLS-FVRSVTMDKWKDVELEKMM 298
+W+ L C +G H + FV + + K KD+E+EK +
Sbjct: 8 IWMLLMCCIFGNIIGSHNNDFVEAKSFSKSKDLEIEKRL 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,926
Number of Sequences: 28952
Number of extensions: 355902
Number of successful extensions: 1181
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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