Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0590
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   5.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   7.2  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   7.2  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   7.2  

>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 157 WD-CETILSTYSNLYNHPKLIEEPKKPKRIVIDPK 258
           WD CE++L  Y+N +N    I + ++  +++ D K
Sbjct: 142 WDVCESLLKVYANTFNVTNYILDFEQADKLLSDLK 176


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +1

Query: 139 VEPKERWDCETILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPK 273
           ++P +R+D   +L    N  N P +  E   P+   ++ +T + +
Sbjct: 23  LDPVQRFDTHFMLPQEENFLNRPSITSESAHPRGSDLEQETELKR 67


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 163 CETILSTYSNLYNHPKLIEEP 225
           CE  L+ Y NL N PK++ EP
Sbjct: 144 CEE-LAKYGNLKNRPKIVWEP 163


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 169 TILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGADG-GRLTVK 312
           T + TYS     PKL++    P    I   T +PKD  G    GRL V+
Sbjct: 99  TPMGTYSE---KPKLLQSRTPPSSCYIRHDTVVPKDKNGQHAFGRLYVR 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,075
Number of Sequences: 5004
Number of extensions: 28627
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)