BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0590 (650 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 52 4e-07 08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532... 28 5.6 03_05_0958 - 29200048-29200731 28 7.4 01_06_0250 + 27876358-27879261 28 7.4 04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 27 9.8 03_01_0090 + 718746-719998,720089-720161,720198-720254 27 9.8 >03_03_0107 + 14504065-14504448,14504545-14504922,14506011-14506619, 14507110-14507237,14507829-14507832 Length = 500 Score = 52.0 bits (119), Expect = 4e-07 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 4/63 (6%) Frame = +1 Query: 142 EPKERWDCETILSTYSNLYNHPKLIEEPKKPK-RI--VIDPKTGIPKDVLGADG-GRLTV 309 + E WDCETI+STYSNL NHP I+ P PK R+ V +T KD++ G RL V Sbjct: 355 DESEVWDCETIVSTYSNLDNHPGKIQTPGNPKNRLPKVFPGETATTKDIIRLQGKERLPV 414 Query: 310 KAL 318 + L Sbjct: 415 EYL 417 >08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377, 5322463-5322942,5323069-5323167,5323306-5323427, 5323517-5323635,5323734-5323801,5323889-5324074, 5324169-5324244,5324339-5324418,5324505-5324561, 5324980-5325122,5325208-5325352,5325652-5325813, 5325893-5326078,5326263-5326355,5326437-5326597, 5327005-5327109,5328263-5328278 Length = 902 Score = 28.3 bits (60), Expect = 5.6 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 205 PKLIEEPKKPKRIVIDPKTGIP 270 PKL E P KP R+++ TG+P Sbjct: 79 PKLAEIPFKPARVLLQDFTGVP 100 >03_05_0958 - 29200048-29200731 Length = 227 Score = 27.9 bits (59), Expect = 7.4 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +1 Query: 22 GSSKPRRGSTSSTRKPK*GGYNVFRKSKKNLKKMSSPWXVEPKERW 159 G SK G + + GG + K KK+ KK S W +P RW Sbjct: 179 GDSKSSDGEKEAEVDGEDGGGS---KDKKDKKKKRSSWLPDPDRRW 221 >01_06_0250 + 27876358-27879261 Length = 967 Score = 27.9 bits (59), Expect = 7.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 187 SNLYNHPKLIEEPKKPKRIVIDPKTGI 267 S+L++HP IE + V DPKTGI Sbjct: 557 SSLFSHPLSIERREISAEGVYDPKTGI 583 >04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424, 21556524-21556620,21557113-21557141,21557620-21557781, 21557981-21558061,21558156-21558314,21558394-21558510, 21558598-21558666,21558753-21558831,21560884-21561050, 21561109-21561229,21561522-21561649,21562293-21562361, 21562408-21562539,21562619-21562991,21563274-21563398, 21563500-21563655,21563785-21564198,21564634-21564691, 21566522-21566648,21568047-21568305,21569005-21569104, 21569231-21569317,21569454-21569692,21569914-21569999, 21570409-21570532,21571111-21574332 Length = 2444 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = +1 Query: 109 NLKKMSSPWXVEPKERWDCETILSTYSNLYNHPKLIEEPK 228 NL M + W ++ KERWD + Y + +L P+ Sbjct: 202 NLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPR 241 >03_01_0090 + 718746-719998,720089-720161,720198-720254 Length = 460 Score = 27.5 bits (58), Expect = 9.8 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 134 GKLSPRRDGTARQSSAPTPTC 196 G L P DGT + + P+PTC Sbjct: 384 GTLEPASDGTIAEYAIPSPTC 404 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,457,327 Number of Sequences: 37544 Number of extensions: 203180 Number of successful extensions: 712 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 712 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1620349964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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