Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0590
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066...    52   4e-07
08_01_0606 - 5321751-5321819,5321950-5322192,5322279-5322377,532...    28   5.6  
03_05_0958 - 29200048-29200731                                         28   7.4  
01_06_0250 + 27876358-27879261                                         28   7.4  
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564...    27   9.8  
03_01_0090 + 718746-719998,720089-720161,720198-720254                 27   9.8  

>03_03_0107 +
           14504065-14504448,14504545-14504922,14506011-14506619,
           14507110-14507237,14507829-14507832
          Length = 500

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = +1

Query: 142 EPKERWDCETILSTYSNLYNHPKLIEEPKKPK-RI--VIDPKTGIPKDVLGADG-GRLTV 309
           +  E WDCETI+STYSNL NHP  I+ P  PK R+  V   +T   KD++   G  RL V
Sbjct: 355 DESEVWDCETIVSTYSNLDNHPGKIQTPGNPKNRLPKVFPGETATTKDIIRLQGKERLPV 414

Query: 310 KAL 318
           + L
Sbjct: 415 EYL 417


>08_01_0606 -
           5321751-5321819,5321950-5322192,5322279-5322377,
           5322463-5322942,5323069-5323167,5323306-5323427,
           5323517-5323635,5323734-5323801,5323889-5324074,
           5324169-5324244,5324339-5324418,5324505-5324561,
           5324980-5325122,5325208-5325352,5325652-5325813,
           5325893-5326078,5326263-5326355,5326437-5326597,
           5327005-5327109,5328263-5328278
          Length = 902

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 205 PKLIEEPKKPKRIVIDPKTGIP 270
           PKL E P KP R+++   TG+P
Sbjct: 79  PKLAEIPFKPARVLLQDFTGVP 100


>03_05_0958 - 29200048-29200731
          Length = 227

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 22  GSSKPRRGSTSSTRKPK*GGYNVFRKSKKNLKKMSSPWXVEPKERW 159
           G SK   G   +    + GG +   K KK+ KK  S W  +P  RW
Sbjct: 179 GDSKSSDGEKEAEVDGEDGGGS---KDKKDKKKKRSSWLPDPDRRW 221


>01_06_0250 + 27876358-27879261
          Length = 967

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 187 SNLYNHPKLIEEPKKPKRIVIDPKTGI 267
           S+L++HP  IE  +     V DPKTGI
Sbjct: 557 SSLFSHPLSIERREISAEGVYDPKTGI 583


>04_03_0998 -
           21555696-21556080,21556177-21556254,21556333-21556424,
           21556524-21556620,21557113-21557141,21557620-21557781,
           21557981-21558061,21558156-21558314,21558394-21558510,
           21558598-21558666,21558753-21558831,21560884-21561050,
           21561109-21561229,21561522-21561649,21562293-21562361,
           21562408-21562539,21562619-21562991,21563274-21563398,
           21563500-21563655,21563785-21564198,21564634-21564691,
           21566522-21566648,21568047-21568305,21569005-21569104,
           21569231-21569317,21569454-21569692,21569914-21569999,
           21570409-21570532,21571111-21574332
          Length = 2444

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 109 NLKKMSSPWXVEPKERWDCETILSTYSNLYNHPKLIEEPK 228
           NL  M + W ++ KERWD   +   Y +     +L   P+
Sbjct: 202 NLLMMDAGWKIDGKERWDKSKVDHIYESPDKVMRLFSLPR 241


>03_01_0090 + 718746-719998,720089-720161,720198-720254
          Length = 460

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 134 GKLSPRRDGTARQSSAPTPTC 196
           G L P  DGT  + + P+PTC
Sbjct: 384 GTLEPASDGTIAEYAIPSPTC 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,457,327
Number of Sequences: 37544
Number of extensions: 203180
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)