Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0590
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009855-1|AAH09855.1|  475|Homo sapiens LTV1 homolog (S. cerevi...    75   2e-13
AL049844-1|CAI21442.1|  475|Homo sapiens LTV1 homolog (S. cerevi...    75   2e-13
AK027815-1|BAB55388.1|  299|Homo sapiens protein ( Homo sapiens ...    75   2e-13

>BC009855-1|AAH09855.1|  475|Homo sapiens LTV1 homolog (S.
           cerevisiae) protein.
          Length = 475

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = +1

Query: 142 EPKERWDCETILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGADGGRLTVKALA 321
           E KE+WDCE+I STYSNLYNHP+LI+   KPK+I I  KTGIP +VL   G  LT K   
Sbjct: 343 EAKEKWDCESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKG--LTAKQTE 400

Query: 322 RFNAMS 339
           R   ++
Sbjct: 401 RIQMIN 406


>AL049844-1|CAI21442.1|  475|Homo sapiens LTV1 homolog (S.
           cerevisiae) protein.
          Length = 475

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = +1

Query: 142 EPKERWDCETILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGADGGRLTVKALA 321
           E KE+WDCE+I STYSNLYNHP+LI+   KPK+I I  KTGIP +VL   G  LT K   
Sbjct: 343 EAKEKWDCESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKG--LTAKQTE 400

Query: 322 RFNAMS 339
           R   ++
Sbjct: 401 RIQMIN 406


>AK027815-1|BAB55388.1|  299|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14909 fis, clone PLACE1006037. ).
          Length = 299

 Score = 75.4 bits (177), Expect = 2e-13
 Identities = 37/66 (56%), Positives = 45/66 (68%)
 Frame = +1

Query: 142 EPKERWDCETILSTYSNLYNHPKLIEEPKKPKRIVIDPKTGIPKDVLGADGGRLTVKALA 321
           E KE+WDCE+I STYSNLYNHP+LI+   KPK+I I  KTGIP +VL   G  LT K   
Sbjct: 167 EAKEKWDCESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKG--LTAKQTE 224

Query: 322 RFNAMS 339
           R   ++
Sbjct: 225 RIQMIN 230


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,938,777
Number of Sequences: 237096
Number of extensions: 1095756
Number of successful extensions: 3074
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3074
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)