Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0590
(650 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF132172-1|AAD34760.1| 493|Drosophila melanogaster unknown prot... 79 5e-15
AE013599-1184|AAF58742.1| 493|Drosophila melanogaster CG7686-PA... 79 5e-15
M25545-4|AAA28621.1| 361|Drosophila melanogaster protein ( D.me... 29 7.2
M25545-3|AAA28624.1| 365|Drosophila melanogaster protein ( D.me... 29 7.2
M25545-2|AAA28623.1| 360|Drosophila melanogaster protein ( D.me... 29 7.2
M25545-1|AAA28622.1| 364|Drosophila melanogaster protein ( D.me... 29 7.2
M15766-1|AAA70426.1| 365|Drosophila melanogaster unknown protei... 29 7.2
BT004503-1|AAO42667.1| 2201|Drosophila melanogaster GH07949p pro... 29 7.2
AY061448-1|AAL28996.1| 361|Drosophila melanogaster LD38464p pro... 29 7.2
AE014298-2947|AAF49026.2| 2529|Drosophila melanogaster CG32529-P... 29 7.2
AE014297-4248|AAN14144.1| 361|Drosophila melanogaster CG9983-PF... 29 7.2
AE014297-4247|AAN14143.1| 361|Drosophila melanogaster CG9983-PD... 29 7.2
AE014297-4246|AAN14142.1| 365|Drosophila melanogaster CG9983-PC... 29 7.2
AE014297-4245|AAF56801.1| 365|Drosophila melanogaster CG9983-PB... 29 7.2
AE014297-4244|AAN14141.1| 360|Drosophila melanogaster CG9983-PE... 29 7.2
AE014297-4243|AAF56800.2| 364|Drosophila melanogaster CG9983-PA... 29 7.2
AE014134-2766|AAF53565.1| 431|Drosophila melanogaster CG13278-P... 28 9.6
>AF132172-1|AAD34760.1| 493|Drosophila melanogaster unknown
protein.
Length = 493
Score = 79.0 bits (186), Expect = 5e-15
Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 11/71 (15%)
Frame = +1
Query: 142 EPKER-WDCETILSTYSNLYNHPKLIEEPKKPKR---------IVIDPKTGIPKDVL-GA 288
+PK++ WDCE+ILSTYSN+YNHPK+I+EP++ +R I IDPKTG+P +VL G
Sbjct: 335 DPKQKKWDCESILSTYSNIYNHPKVIDEPRRSRRSSASTNPAPIQIDPKTGLPTNVLRGG 394
Query: 289 DGGRLTVKALA 321
G+LT KALA
Sbjct: 395 VDGQLTAKALA 405
>AE013599-1184|AAF58742.1| 493|Drosophila melanogaster CG7686-PA
protein.
Length = 493
Score = 79.0 bits (186), Expect = 5e-15
Identities = 40/71 (56%), Positives = 53/71 (74%), Gaps = 11/71 (15%)
Frame = +1
Query: 142 EPKER-WDCETILSTYSNLYNHPKLIEEPKKPKR---------IVIDPKTGIPKDVL-GA 288
+PK++ WDCE+ILSTYSN+YNHPK+I+EP++ +R I IDPKTG+P +VL G
Sbjct: 335 DPKQKKWDCESILSTYSNIYNHPKVIDEPRRSRRSSASTNPAPIQIDPKTGLPTNVLRGG 394
Query: 289 DGGRLTVKALA 321
G+LT KALA
Sbjct: 395 VDGQLTAKALA 405
>M25545-4|AAA28621.1| 361|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 361
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 75 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 120
>M25545-3|AAA28624.1| 365|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 365
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 79 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 124
>M25545-2|AAA28623.1| 360|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 360
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 74 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 119
>M25545-1|AAA28622.1| 364|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 364
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 78 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 123
>M15766-1|AAA70426.1| 365|Drosophila melanogaster unknown protein
protein.
Length = 365
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 79 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 124
>BT004503-1|AAO42667.1| 2201|Drosophila melanogaster GH07949p
protein.
Length = 2201
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 217 EEPKKPKRIVIDPKTGIPKDVLGADGGRLTVKALARFNA 333
E+PK PK++ KT ++++G G L K +A NA
Sbjct: 476 EKPKPPKQLPKKRKTAFTEELIGDYKGILARKRMASLNA 514
>AY061448-1|AAL28996.1| 361|Drosophila melanogaster LD38464p
protein.
Length = 361
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 75 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 120
>AE014298-2947|AAF49026.2| 2529|Drosophila melanogaster CG32529-PA,
isoform A protein.
Length = 2529
Score = 28.7 bits (61), Expect = 7.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 217 EEPKKPKRIVIDPKTGIPKDVLGADGGRLTVKALARFNA 333
E+PK PK++ KT ++++G G L K +A NA
Sbjct: 804 EKPKPPKQLPKKRKTAFTEELIGDYKGILARKRMASLNA 842
>AE014297-4248|AAN14144.1| 361|Drosophila melanogaster CG9983-PF,
isoform F protein.
Length = 361
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 75 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 120
>AE014297-4247|AAN14143.1| 361|Drosophila melanogaster CG9983-PD,
isoform D protein.
Length = 361
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 75 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 120
>AE014297-4246|AAN14142.1| 365|Drosophila melanogaster CG9983-PC,
isoform C protein.
Length = 365
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 79 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 124
>AE014297-4245|AAF56801.1| 365|Drosophila melanogaster CG9983-PB,
isoform B protein.
Length = 365
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 79 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 124
>AE014297-4244|AAN14141.1| 360|Drosophila melanogaster CG9983-PE,
isoform E protein.
Length = 360
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 74 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 119
>AE014297-4243|AAF56800.2| 364|Drosophila melanogaster CG9983-PA,
isoform A protein.
Length = 364
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 196 YNHPKLIEEPKK--PKRI---VIDPKTGIPKDVLGADGGRLTVKAL 318
Y+H +I+E +K P +I V++PK +P+ + + TVK L
Sbjct: 78 YSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKL 123
>AE014134-2766|AAF53565.1| 431|Drosophila melanogaster CG13278-PA
protein.
Length = 431
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 264 TSFWIYHDPLRFLRFLYEFRMVVQVGVGAEDCLA 163
T W++ DP + +R+L F + V V +C A
Sbjct: 7 TRAWLFRDPAKLIRYLVLFACCIVVIVQLYECFA 40
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,500
Number of Sequences: 53049
Number of extensions: 338265
Number of successful extensions: 1116
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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